ORK07610

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK07610

Order Kazusa clone(s) from :

Accession No	AB209265
Product ID	ORK07610
Clone name	fk02264
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	ATP2C1
cDNA sequence	DNA sequence (3575 bp) Predicted protein sequence (627 aa)
Description	Homo sapiens mRNA for calcium-transporting ATPase 2C1 isoform 1d variant protein.

Features of the cloned cDNA sequence

Description

Length: 3575 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	645 bp
Genome contig ID	gi89161205f_132064436
PolyA signal sequence (AGTAAA,-23)	+--------+--------+----*----+---- ACTACAATTTGAAGTAAATTTTTGTTTTTCTTAGT
Flanking genome sequence (139095 - 139144)	----+--------+--------+--------+--------+----* AAGTGTAAATGGTTGCTTTATTTTTATTTTAAAAAGGTATGTCTTTGGTT

Features of the protein sequence

Description

Length: 627 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAD92502	100.0	calcium-transpo...	Homo sapiens
BAG65057	99.5	unnamed protein...	Homo sapiens
AAF27813	99.5	calcium transpo...	Homo sapiens
P98194	99.5	Calcium-transpo...	Homo sapiens
AAP30009	99.5	secretory pathw...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001757	56	70	PR00119	ATPase
	IPR000695	218	236	PR00120	H+ transporting ATPase
	IPR001757	248	259	PR00119	ATPase
	IPR001757	270	280	PR00119	ATPase
	IPR000695	322	338	PR00120	H+ transporting ATPase
	IPR000695	350	366	PR00120	H+ transporting ATPase
	IPR001757	350	369	PR00119	ATPase
	IPR001757	374	386	PR00119	ATPase
	IPR000695	382	407	PR00120	H+ transporting ATPase
HMMPfam	IPR008250	8	48	PF00122	E1-E2 ATPase-associated region
	IPR005834	52	373	PF00702	Haloacid dehalogenase-like hydrolase
	IPR006068	469	610	PF00689	ATPase
HMMTigr	IPR001757	1	75	TIGR01494	ATPase
	IPR006413	2	611	TIGR01522	Calcium-transporting P-type ATPase
	IPR001757	218	295	TIGR01494	ATPase
	IPR001757	322	443	TIGR01494	ATPase
ScanRegExp	IPR001757	58	64	PS00154	ATPase

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	7	YSLAVAAIPEGLPIVVTVTLALG	29	PRIMARY	23
	2	481	KNLILKILVSSIIIVCGTLFVFW	503	PRIMARY	23
	3	551	MFCYAVLGSIMGQLLVIYFPPLQ	573	PRIMARY	23
	4	580	SLSILDLLFLLGLTSSVCIVAEI	602	PRIMARY	23