ORK07637

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK07637

Order Kazusa clone(s) from :

Accession No	AB209016
Product ID	ORK07637
Clone name	hg03909
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	CACNA1C
cDNA sequence	DNA sequence (6534 bp) Predicted protein sequence (840 aa)
Description	calcium channel, voltage-dependent, L type, alpha 1C subunit

Features of the cloned cDNA sequence

Description

Length: 6534 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : YES

Integrity of 3' end

Length of 3'UTR	2946 bp
Genome contig ID	gi89161190f_1932965
PolyA signal sequence (None)	+--------+--------+----*----+---- CTAACCATCCCACTCCTTAAATTCATACTCTGTTC
Flanking genome sequence (661435 - 661484)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAATCACACAAAGAAACTAGGAATCAACATAAACCAG

Features of the protein sequence

Description

Length: 840 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAD92253	100.0	Voltage-depende...	Homo sapiens
EAW88906	98.4	calcium channel...	Homo sapiens
EAW88895	98.4	calcium channel...	Homo sapiens
EAW88898	98.4	calcium channel...	Homo sapiens
EAW88899	98.4	calcium channel...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR005446	62	80	PR01630	L-type voltage-dependent calcium channel alpha 1 subunit
	IPR005446	151	166	PR01630	L-type voltage-dependent calcium channel alpha 1 subunit
	IPR005446	239	252	PR01630	L-type voltage-dependent calcium channel alpha 1 subunit
	IPR002077	248	274	PR00167	Ca2+ channel
	IPR005451	349	368	PR01635	L-type voltage-dependent calcium channel alpha 1C subunit
	IPR005451	369	388	PR01635	L-type voltage-dependent calcium channel alpha 1C subunit
	IPR005451	389	405	PR01635	L-type voltage-dependent calcium channel alpha 1C subunit
	IPR002077	728	748	PR00167	Ca2+ channel
HMMPfam	IPR005821	119	313	PF00520	Ion transport
	IPR005821	496	726	PF00520	Ion transport
	IPR005821	814	839	PF00520	Ion transport

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	81	AVKSNVFYWLVIFLVFLNTLTIA	103	PRIMARY	23
	2	146	VSLFNRFDCFVVCGGILETILVE	168	SECONDARY	23
	3	171	IMSPLGISVLRCVRLLRIFKITR	193	SECONDARY	23
	4	207	NSVRSIASLLLLLFLFIIIFSLL	229	PRIMARY	23
	5	291	CIYFIILFICGNYILLNVFLAIA	313	PRIMARY	23
	6	456	RIVNDTIFTNLILFFILLSSISL	478	SECONDARY	23
	7	494	LGNADYVFTSIFTLEIILKMTAY	516	SECONDARY	23
	8	524	SFCRNYFNILDLLVVSVSLISFG	546	SECONDARY	23
	9	586	AIRTIGNIVIVTTLLQFMFACIG	608	PRIMARY	23
	10	663	LAAMMALFTVSTFEGWPELLYRS	685	SECONDARY	23
	11	705	IFFIIYIIIIAFFMMNIFVGFVI	727	PRIMARY	23
	12	781	YFEYLMFVLILLNTICLAMQHYG	803	PRIMARY	23
	13	811	AMNILNMLFTGLFTVEMILKLIA	833	PRIMARY	23