Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK07713
Order Kazusa clone(s) from : Japan || Other countries
Accession No
Product ID ORK07713
Clone name fg03009
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol CXCL12
cDNA sequence DNA sequence (6196 bp)
Predicted protein sequence (157 aa)
Flexi ORF Clone FXC07713
Description chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)
Features of the cloned cDNA sequence

Length: 6196 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: YES
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 5720 bp
Genome contig ID gi89161187r_44085620
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
TATAATTTTCCTAATAAAGTTCTGTACTCAAATGT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGCCACCAACAGTTTGAAATTAGTGTTACTACTTGGAATTTTCTGGACGT

Features of the protein sequence

Length: 157 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAG11056 3.1e-52 100.0 stromal cell-de...
synthetic construct
EDK99573 2.1e-39 82.0 chemokine (C-X-...
Mus musculus
AAT76437 7.2e-37 87.2 stromal cell-de...
Homo sapiens
NP_001012495 2.8e-35 82.2 stromal cell-de...
Mus musculus
XP_001489694 4.5e-35 82.2 similar to stro...
Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001811 42 107 PF00048 Small chemokine
HMMSmart IPR001811 47 106 SM00199 Small chemokine

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 19 RAMNAKVVVVLVLVLTALCLSD 40 PRIMARY 22
Order Kazusa clone(s) from : Japan || Other countries
Send a message to office AT kazusa.or.jp