ORK06887

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK06887

Order Kazusa clone(s) from :

Accession No	AB209172
Product ID	ORK06887
Clone name	ah01145
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	SLC6A6
cDNA sequence	DNA sequence (6328 bp) Predicted protein sequence (367 aa)
Description	Sodium- and chloride-dependent taurine transporter.

Features of the cloned cDNA sequence

Description

Length: 6328 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : YES

Integrity of 3' end

Length of 3'UTR	4997 bp
Genome contig ID	gi89161205f_14332922
PolyA signal sequence (AATAAA,-25)	+--------+--------+----*----+---- ATAACATGAAAATAAACATTTCCTTTTTAACATCC
Flanking genome sequence (172939 - 172988)	----+--------+--------+--------+--------+----* AACATGTGTGGGTTGTGTTCTGGTGAGGTATTTCCCCCTCAACGTTTGCC

Features of the protein sequence

Description

Length: 367 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92409	8.6e-162	100.0	solute carrier ...	Homo sapiens
EAW64193	1e-141	93.7	solute carrier ...	Homo sapiens
XP_001092530	1.2e-141	99.0	solute carrier ...	Macaca mulatta
P31641	1.8e-141	93.7	Sodium- and chl...	Homo sapiens
XP_001092647	2.1e-141	93.4	solute carrier ...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR000175	48	76	PD000448	Sodium:neurotransmitter symporter
FPrintScan	IPR002434	39	51	PR01200	Taurine transporter
	IPR000175	57	78	PR00176	Sodium:neurotransmitter symporter
	IPR000175	86	105	PR00176	Sodium:neurotransmitter symporter
	IPR000175	130	156	PR00176	Sodium:neurotransmitter symporter
	IPR002434	179	187	PR01200	Taurine transporter
	IPR000175	253	270	PR00176	Sodium:neurotransmitter symporter
HMMPfam	IPR000175	49	367	PF00209	Sodium:neurotransmitter symporter
ProfileScan	IPR000175	48	333	PS50267	Sodium:neurotransmitter symporter
ScanRegExp	IPR000175	73	87	PS00610	Sodium:neurotransmitter symporter
ScanRegExp	IPR000175	156	176	PS00754	Sodium:neurotransmitter symporter

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	54	SKIDFVLSVAGGFVGLGNVWRFP	76	SECONDARY	23
	2	86	AFLIPYFIFLFGSGLPVFFLEII	108	PRIMARY	23
	3	131	IGYASVVIVSLLNVYYIVILAWA	153	PRIMARY	23
	4	227	DLALCLLLVWLVCFFCIWKGVRS	249	PRIMARY	23
	5	254	VYFTATFPFAMLLVLLVRGLTLP	276	PRIMARY	23
	6	300	IDAGTQIFFSYAICLGAMTSLG	321	SECONDARY	22