Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK07263
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | AB209782 |
|---|---|
| Product ID | ORK07263 |
| Clone name | bm02564 |
| Vector information |
The cDNA fragment was inserted at the XhoI-SacI site
of the ...
|
| Symbol | UBC |
| cDNA sequence | DNA sequence (3996 bp) Predicted protein sequence (1309 aa) |
| Description | Ubiquitin. |
Length: 3996 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: YES Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 66 bp |
|---|---|
| Genome contig ID | gi89161190r_123862147 |
| PolyA signal sequence (AATAAA,-20) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (100000 - 99951) |
----+----*----+----*----+----*----+----*----+----* |
Length: 1309 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| FPrintScan | IPR000626 | 27 | 47 | PR00348 | Ubiquitin |
| IPR000626 | 48 | 68 | PR00348 | Ubiquitin | |
| IPR000626 | 69 | 90 | PR00348 | Ubiquitin | |
| HMMPfam | IPR000626 | 22 | 90 | PF00240 | Ubiquitin |
| IPR000626 | 98 | 166 | PF00240 | Ubiquitin | |
| IPR000626 | 174 | 242 | PF00240 | Ubiquitin | |
| IPR000626 | 250 | 318 | PF00240 | Ubiquitin | |
| IPR000626 | 326 | 394 | PF00240 | Ubiquitin | |
| IPR000626 | 402 | 470 | PF00240 | Ubiquitin | |
| IPR000626 | 478 | 546 | PF00240 | Ubiquitin | |
| IPR000626 | 554 | 622 | PF00240 | Ubiquitin | |
| IPR000626 | 630 | 698 | PF00240 | Ubiquitin | |
| IPR000626 | 706 | 774 | PF00240 | Ubiquitin | |
| IPR000626 | 782 | 850 | PF00240 | Ubiquitin | |
| IPR000626 | 858 | 926 | PF00240 | Ubiquitin | |
| IPR000626 | 934 | 1002 | PF00240 | Ubiquitin | |
| IPR000626 | 1010 | 1078 | PF00240 | Ubiquitin | |
| IPR000626 | 1086 | 1154 | PF00240 | Ubiquitin | |
| IPR000626 | 1162 | 1230 | PF00240 | Ubiquitin | |
| IPR000626 | 1238 | 1306 | PF00240 | Ubiquitin | |
| HMMSmart | IPR000626 | 17 | 88 | SM00213 | Ubiquitin |
| IPR000626 | 93 | 164 | SM00213 | Ubiquitin | |
| IPR000626 | 169 | 240 | SM00213 | Ubiquitin | |
| IPR000626 | 245 | 316 | SM00213 | Ubiquitin | |
| IPR000626 | 321 | 392 | SM00213 | Ubiquitin | |
| IPR000626 | 397 | 468 | SM00213 | Ubiquitin | |
| IPR000626 | 473 | 544 | SM00213 | Ubiquitin | |
| IPR000626 | 549 | 620 | SM00213 | Ubiquitin | |
| IPR000626 | 625 | 696 | SM00213 | Ubiquitin | |
| IPR000626 | 701 | 772 | SM00213 | Ubiquitin | |
| IPR000626 | 777 | 848 | SM00213 | Ubiquitin | |
| IPR000626 | 853 | 924 | SM00213 | Ubiquitin | |
| IPR000626 | 929 | 1000 | SM00213 | Ubiquitin | |
| IPR000626 | 1005 | 1076 | SM00213 | Ubiquitin | |
| IPR000626 | 1081 | 1152 | SM00213 | Ubiquitin | |
| IPR000626 | 1157 | 1228 | SM00213 | Ubiquitin | |
| IPR000626 | 1233 | 1304 | SM00213 | Ubiquitin | |
| ProfileScan | IPR000626 | 17 | 92 | PS50053 | Ubiquitin |
| IPR000626 | 93 | 168 | PS50053 | Ubiquitin | |
| IPR000626 | 169 | 244 | PS50053 | Ubiquitin | |
| IPR000626 | 245 | 320 | PS50053 | Ubiquitin | |
| IPR000626 | 321 | 396 | PS50053 | Ubiquitin | |
| IPR000626 | 397 | 472 | PS50053 | Ubiquitin | |
| IPR000626 | 473 | 548 | PS50053 | Ubiquitin | |
| IPR000626 | 549 | 624 | PS50053 | Ubiquitin | |
| IPR000626 | 625 | 700 | PS50053 | Ubiquitin | |
| IPR000626 | 701 | 776 | PS50053 | Ubiquitin | |
| IPR000626 | 777 | 852 | PS50053 | Ubiquitin | |
| IPR000626 | 853 | 928 | PS50053 | Ubiquitin | |
| IPR000626 | 929 | 1004 | PS50053 | Ubiquitin | |
| IPR000626 | 1005 | 1080 | PS50053 | Ubiquitin | |
| IPR000626 | 1081 | 1156 | PS50053 | Ubiquitin | |
| IPR000626 | 1157 | 1232 | PS50053 | Ubiquitin | |
| IPR000626 | 1233 | 1308 | PS50053 | Ubiquitin | |
| ScanRegExp | IPR000626 | 43 | 68 | PS00299 | Ubiquitin |
| IPR000626 | 119 | 144 | PS00299 | Ubiquitin | |
| IPR000626 | 195 | 220 | PS00299 | Ubiquitin | |
| IPR000626 | 271 | 296 | PS00299 | Ubiquitin | |
| IPR000626 | 347 | 372 | PS00299 | Ubiquitin | |
| IPR000626 | 423 | 448 | PS00299 | Ubiquitin | |
| IPR000626 | 499 | 524 | PS00299 | Ubiquitin | |
| IPR000626 | 575 | 600 | PS00299 | Ubiquitin | |
| IPR000626 | 651 | 676 | PS00299 | Ubiquitin | |
| IPR000626 | 727 | 752 | PS00299 | Ubiquitin | |
| IPR000626 | 803 | 828 | PS00299 | Ubiquitin | |
| IPR000626 | 879 | 904 | PS00299 | Ubiquitin | |
| IPR000626 | 955 | 980 | PS00299 | Ubiquitin | |
| IPR000626 | 1031 | 1056 | PS00299 | Ubiquitin | |
| IPR000626 | 1107 | 1132 | PS00299 | Ubiquitin | |
| IPR000626 | 1183 | 1208 | PS00299 | Ubiquitin |
