ORK04886

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK04886

Order Kazusa clone(s) from :

Accession No	AB209798
Product ID	ORK04886
Clone name	bm03421
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	ELOVL5
cDNA sequence	DNA sequence (2616 bp) Predicted protein sequence (301 aa)
Description	Elongation of very long chain fatty acids protein 5 (hELO1).

Features of the cloned cDNA sequence

Description

Length: 2616 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	1708 bp
Genome contig ID	gi89161210r_53140162
PolyA signal sequence (ATTAAA,-18)	+--------+--------+----*----+---- ATGTCTAAACAGTAATCATTAAAACATTTTTGATT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ACCTGTGCCTGCATTTTACATTTTTTGTGCTGGCAATTCTGAAGAACTGG

Features of the protein sequence

Description

Length: 301 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD93035	6.8e-132	100.0	homolog of yeas...	Homo sapiens
EAX04417	4.4e-112	100.0	ELOVL family me...	Homo sapiens
XP_527417	7.3e-86	100.0	homolog of yeas...	Pan troglodytes
XP_001101181	1.8e-83	96.1	similar to homo...	Macaca mulatta
XP_852962	2e-66	89.2	similar to homo...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002076	32	246	PF01151	GNS1/SUR4 membrane protein

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	70	NYIPTFICSVIYLLIVWLGPKY	91	PRIMARY	22
SOSUI2	2	102	GILVVYNLGLTLLSLYMFCELVT	124	SECONDARY	23