ORK07415

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK07415

Order Kazusa clone(s) from :

Accession No	AB209807
Product ID	ORK07415
Clone name	bm03978
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	ZDHHC9
cDNA sequence	DNA sequence (2504 bp) Predicted protein sequence (389 aa)
Description	Palmitoyltransferase ZDHHC9 (EC 2.3.1.-) (Zinc finger DHHC domain- containing protein 9) (DHHC-9) (DHHC9) (Zinc finger protein 379).

Features of the cloned cDNA sequence

Description

Length: 2504 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	1028 bp
Genome contig ID	gi89161218r_128667034
PolyA signal sequence (None)	+--------+--------+----*----+---- CTCTCCTCTCCTCTCCTCTCCCCCGATGTACCCTC
Flanking genome sequence (99965 - 99916)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAATGCTAACCAGTTCTTCCATTAAGCCTCGGCTGAGTGA

Features of the protein sequence

Description

Length: 389 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD93044	2.9e-142	100.0	zinc finger, DH...	Homo sapiens
T47144	8.5e-139	100.0	yb52h03.s1 Stra...	Homo sapiens
AAD34084	7.6e-138	99.2	CGI-89 protein ...	Homo sapiens
Q9Y397	4.2e-132	100.0	Palmitoyltransf...	Homo sapiens
ACE86503	8e-132	99.7	zinc finger, DH...	synthetic construct

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR001594	162	199	PD003041	Zinc finger
HMMPfam	IPR001594	156	219	PF01529	Zinc finger
ProfileScan	IPR001594	164	214	PS50216	Zinc finger

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	18	HFGAGIPIMSVMVVRK	33	SECONDARY	16
	2	60	KGIFYLTLFLILGTCTLFFAFEC	82	PRIMARY	23
	3	89	LSPAIPVFAAMLFLFSMATLLRT	111	PRIMARY	23
	4	214	LSLSLLTIYVFAFNIVYVALKSL	236	PRIMARY	23
	5	253	EVLICFFTLWSVVGLTGFHTFLV	275	SECONDARY	23