ORK04636

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK04636

Order Kazusa clone(s) from :

Accession No	AB209830
Product ID	ORK04636
Clone name	bm05153
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	CRTAM
cDNA sequence	DNA sequence (1830 bp) Predicted protein sequence (196 aa)
Description	Cytotoxic and regulatory T cell molecule precursor (Class-I MHC- restricted T cell-associated molecule).

Features of the cloned cDNA sequence

Description

Length: 1830 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	1238 bp
Genome contig ID	gi51511727f_122138320
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- TCATTGTTGGAATCTGAATAAACCAATTACAAAAT
Flanking genome sequence (110237 - 110286)	----+--------+--------+--------+--------+----* AACATATGTGCACATTGTAAGTCTGTAATTTGTGATAGGGGCCAGATCCA

Features of the protein sequence

Description

Length: 196 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD93067	1.5e-70	100.0	class-I MHC-res...	Homo sapiens
O95727	1.4e-62	96.7	Cytotoxic and r...	Homo sapiens
AAC80267	2.2e-62	96.2	class-I MHC-res...	Homo sapiens
XP_001136009	2.5e-62	96.2	class-I MHC-res...	Pan troglodytes
BAG36349	3.9e-62	95.7	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	4	WVKLLSIVAEFCFSPFLVTDEET	26	SECONDARY	23
SOSUI2	2	90	GILLLTLVSFLIFILFIIVQLFI	112	PRIMARY	23