ORK11794

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK11794

Order Kazusa clone(s) from :

Accession No
Product ID	ORK11794
Clone name	bn02167
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	MAL
cDNA sequence	DNA sequence (1035 bp) Predicted protein sequence (165 aa)
HaloTag ORF Clone	FHC11794
Flexi ORF Clone	FXC11794
Description	Myelin and lymphocyte protein (T-lymphocyte maturation-associated protein)

Features of the cloned cDNA sequence

Description

Length: 1035 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: YES

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	535 bp
Genome contig ID	gi89161199f_94955227
PolyA signal sequence (TATAAA,-20)	+--------+--------+----*----+---- CCCTGTGAAATACTTTATAAAATGTCTTAATGTTC
Flanking genome sequence (128237 - 128286)	----+--------+--------+--------+--------+----* AATACATTTGTTGGGTGTTTTTTGGGTTTGGGTTGAATTCCTCAGCATCA

Features of the protein sequence

Description

Length: 165 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
P21145	6.6e-60	100.0	Myelin and lymp...	Homo sapiens
XP_515616	1.1e-59	99.3	T-lymphocyte ma...	Pan troglodytes
BAE88694	3.7e-59	97.3	unnamed protein...	Macaca fascicularis
Q64349	3.8e-55	88.8	Myelin and lymp...	Rattus norvegicus
Q28296	6.4e-54	88.2	Myelin and lymp...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR013295	44	56	PR01884	Myelin and lymphocyte (MAL)
	IPR013295	65	78	PR01884	Myelin and lymphocyte (MAL)
	IPR013295	96	111	PR01884	Myelin and lymphocyte (MAL)
	IPR013295	134	151	PR01884	Myelin and lymphocyte (MAL)
HMMPfam	IPR008253	30	163	PF01284	Marvel
ProfileScan	IPR008253	30	163	PS51225	Marvel

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	31	FTTLPDLLFIFEFIFGGLVWILV	53	PRIMARY	23
	2	68	MFVSVFCFVATTTLIILYIIGAH	90	PRIMARY	23
	3	106	TAALFYLSASVLEALATITMQDG	128	PRIMARY	23
	4	138	IAAVVFSYIATLLYVVHAVFSLI	160	PRIMARY	23