ORK07083

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK07083

Order Kazusa clone(s) from :

Accession No	AB209858
Product ID	ORK07083
Clone name	ef02128
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	TEAD1
cDNA sequence	DNA sequence (8477 bp) Predicted protein sequence (371 aa)
Description	Transcriptional enhancer factor TEF-1 (TEA domain family member 1) (TEAD-1) (Protein GT-IIC) (Transcription factor 13) (NTEF-1).

Features of the cloned cDNA sequence

Description

Length: 8477 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	7261 bp
Genome contig ID	gi51511727f_12757566
PolyA signal sequence (TATAAA,-15)	+--------+--------+----*----+---- TTGTGTGCAGAGAATTTTTTTATAAAGTGCTTTGT
Flanking genome sequence (165042 - 165091)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAATGTATTCTAGCTTTTGCGGTACATATGTGTGATAACT

Features of the protein sequence

Description

Length: 371 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD93095	7.9e-143	100.0	TEA domain fami...	Homo sapiens
XP_508291	1.4e-125	100.0	similar to TEA ...	Pan troglodytes
XP_001095746	1.6e-124	99.6	similar to TEA ...	Macaca mulatta
XP_001095647	4.9e-121	100.0	similar to TEA ...	Macaca mulatta
EAW68521	4.8e-120	99.6	TEA domain fami...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000818	1	363	PF01285	TEA/ATTS

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	3	FSLLAVLFIHACLLFLAYFVALY	25	PRIMARY	23
SOSUI2	2	32	GCACVTCLVAMRYVLSWCVTVTF	54	PRIMARY	23