ORK00151

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK00151

Order Kazusa clone(s) from :

Accession No
Product ID	ORK00151
Clone name	ef05178
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	DOPEY2
cDNA sequence	DNA sequence (7495 bp) Predicted protein sequence (2250 aa)
HaloTag ORF Clone	FHC00151
Flexi ORF Clone	FXC00151
Description	Uncharacterized protein C21orf5.

Features of the cloned cDNA sequence

Description

Length: 7495 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	702 bp
Genome contig ID	gi51511750f_36358875
PolyA signal sequence (ATTAAA,-28)	+--------+--------+----*----+---- TAAACTTATTAAAAGAATGTTATTTTTAACCTTTC
Flanking genome sequence (229568 - 229617)	----+--------+--------+--------+--------+----* ACACAAATGTCCTTTAAAGTGCTTATTTTGGTACTCCATTTTAAAACGAA

Features of the protein sequence

Description

Length: 2250 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAG10402	100.0	C21orf5 protein...	synthetic construct
XP_001512569	71.9	similar to Unch...	Ornithorhynchus...
Q9Y3R5	97.7	Protein dopey-2.	Homo sapiens
BAA89431	97.6	C21orf5 [Homo s...	Homo sapiens
XP_531552	97.5	pad-1-like isof...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR007249	5	317	PF04118	Dopey

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	106	LFLYSCGLFPLLAHAAVSVRPVL	128	PRIMARY	23
SOSUI2	2	245	VQRNNLEIVLFFFPFYTCLDSNE	267	SECONDARY	23