ORK05554

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK05554

Order Kazusa clone(s) from :

Accession No	AB209739
Product ID	ORK05554
Clone name	ef05795
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	ITPR3
cDNA sequence	DNA sequence (7807 bp) Predicted protein sequence (2341 aa)
Description	Inositol 1,4,5-trisphosphate receptor type 3 (Type 3 inositol 1,4,5- trisphosphate receptor) (Type 3 InsP3 receptor) (IP3 receptor isoform 3) (InsP3R3).

Features of the cloned cDNA sequence

Description

Length: 7807 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: YES

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	780 bp
Genome contig ID	gi89161210f_33639492
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- TATGTTAATTGCCTTAAATAAATTAATAGAAATCT
Flanking genome sequence (132826 - 132875)	----+--------+--------+--------+--------+----* AGTCCGTTAAAAAGGGATGTGTTTCCTGCACTCCCCCGGGGGCTGTGGGG

Features of the protein sequence

Description

Length: 2341 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAD92976	100.0	Inositol 1,4,5-...	Homo sapiens
CAI16455	99.9	inositol 1,4,5-...	Homo sapiens
Q14573	99.7	Inositol 1,4,5-...	Homo sapiens
AAC50064	99.5	human type 3 in...	Homo sapiens
XP_538867	97.1	similar to Inos...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003608	1	102	PF02815	MIR
	IPR000699	141	347	PF01365	Intracellular calcium-release channel
	IPR000699	841	1015	PF01365	Intracellular calcium-release channel
	IPR013662	1041	1650	PF08454	RyR and IP3R Homology associated
	IPR005821	1961	2186	PF00520	Ion transport
ScanRegExp	IPR001220	1139	1145	PS00307	Legume lectin

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1876	SISFNLAVFINIIIAFFYPYMEG	1898	PRIMARY	23
	2	1905	DSPLISLLFWILICFSIAALFT	1926	PRIMARY	22
	3	1932	RPLIVALILRSIYYLGIGPTLNI	1954	PRIMARY	23
	4	1996	YILTSVLGLFAHELFYSILLFDL	2018	SECONDARY	23
	5	2040	LLTALLALILVYLFSIVGFLFLK	2062	PRIMARY	23
	6	2165	VYDLLFFFIVIIIVLNLIFGVII	2187	PRIMARY	23