ORK06997

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK06997

Order Kazusa clone(s) from :

Accession No	AB209132
Product ID	ORK06997
Clone name	fg02418
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	SSRP1
cDNA sequence	DNA sequence (6299 bp) Predicted protein sequence (547 aa)
Description	FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (FACT 80 kDa subunit) (FACTp80) (Chromatin- specific transcription elongation factor 80 kDa subunit) (Structure- specific recognition protein 1) (hSSRP1) (Recombination

Features of the cloned cDNA sequence

Description

Length: 6299 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: YES

Warning for coding interruption : YES

Integrity of 3' end

Length of 3'UTR	4535 bp
Genome contig ID	gi51511727r_56750036
PolyA signal sequence (AATAAA,-26)	+--------+--------+----*----+---- AAATGATTTAATAAAGGGAACTGACTTTGGAAACC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATGTCCTCATGCTTTCTTTGTAGCCTTGGTGTGTTGCTCCCACTTTTATT

Features of the protein sequence

Description

Length: 547 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92369	0	100.0	structure speci...	Homo sapiens
AAH91486	5.1e-40	59.5	SSRP1 protein [...	Homo sapiens
BAE30524	5.3e-40	58.9	unnamed protein...	Mus musculus
XP_849848	5.5e-40	59.5	similar to stru...	Canis lupus fam...
XP_859953	5.5e-40	59.5	similar to stru...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	335	KGFSLLLVLLFSLCHCLWFPIYL	357	PRIMARY	23
	2	380	RLTAVSCLCGTQFGGNIAYADLR	402	SECONDARY	23
	3	496	AGLGAGPAAWLPICAFAGLCPEC	518	PRIMARY	23