ORK06847

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK06847

Order Kazusa clone(s) from :

Accession No	AB208809
Product ID	ORK06847
Clone name	fg03490
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	SLC13A4
cDNA sequence	DNA sequence (7189 bp) Predicted protein sequence (495 aa)
Description	Solute carrier family 13 member 4 (Na(+)/sulfate cotransporter SUT-1).

Features of the cloned cDNA sequence

Description

Length: 7189 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : YES

Integrity of 3' end

Length of 3'UTR	322 bp
Genome contig ID	gi89161213r_134916578
PolyA signal sequence (AATAAA,-34)	+--------+--------+----*----+---- AAATAAAAATTAAATTAAAAAAAAAGAAGACAAAG
Flanking genome sequence (99951 - 99902)	----+--------+--------+--------+--------+----* AAAACCTAAAGTTGTATCTAGTCTTTGTAATCCATTCATTCTGAAGACAG

Features of the protein sequence

Description

Length: 495 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92046	1.3e-207	100.0	solute carrier ...	Homo sapiens
XP_001146691	1.4e-182	99.5	solute carrier ...	Pan troglodytes
EAL24058	3.1e-171	99.0	solute carrier ...	Homo sapiens
EAW83857	3.1e-171	99.0	solute carrier ...	Homo sapiens
Q9UKG4	4.1e-171	98.8	Solute carrier ...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001898	174	479	PF00939	Sodium/sulphate symporter

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	22	GGAGLAEVPWCICSPWLLASGSH	44	SECONDARY	23
	2	139	LSISYSATIGGLTTIIGTSTSLI	161	SECONDARY	23
	3	179	GTWFLFSFPISLIMLVVSWFWMH	201	PRIMARY	23
	4	241	ISYPEMVTGFFFILMTVLWFTRE	263	SECONDARY	23
	5	283	ATVSVFLGFLLFLIPA	298	SECONDARY	16
	6	326	DFQKTMPWEIVILVGGGYALAS	347	SECONDARY	22
	7	367	SLPPWAVTLLACILVSIVTEFVS	389	PRIMARY	23
	8	412	PLYTLIPVTMCISFAVMLPVGN	433	PRIMARY	22
	9	450	MVKAGLGVNVIGLVIVMVAINTW	472	PRIMARY	23