ORK10409

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK10409

Order Kazusa clone(s) from :

Accession No
Product ID	ORK10409
Clone name	fh16728
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	CELSR3
cDNA sequence	DNA sequence (5060 bp) Predicted protein sequence (744 aa)
Description	Solute carrier family 26 member 6 (Pendrin-like protein 1)(Pendrin-L1)

Features of the cloned cDNA sequence

Description

Length: 5060 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: YES

Warning for coding interruption : YES

Integrity of 3' end

Length of 3'UTR	1741 bp
Genome contig ID	gi89161205r_48548901
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- GCGCTCTGTTTTGGGAATAAACTTCTATAGAAAAC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AGTTGTTGCCTTTTCCTGTTGGGGGCTGGGGAGGTAGGATGGAAGCTGTG

Features of the protein sequence

Description

Length: 744 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAA32464	99.5	MEGF2 [Homo sap...	Homo sapiens
EAW64914	99.5	cadherin, EGF L...	Homo sapiens
Q9NYQ7	99.5	Cadherin EGF LA...	Homo sapiens
NP_001398	99.5	cadherin EGF LA...	Homo sapiens
AAU94938	99.2	anchor protein ...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000832	56	210	PF00002	GPCR
ProfileScan	IPR000832	1	207	PS50261	GPCR
ScanRegExp	IPR000832	195	210	PS00650	GPCR

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	74	MRFYHALGWGVPAVLLGLAVGL	95	PRIMARY	22
	2	118	FAGPVVLVIVMNGTMFLLAART	139	PRIMARY	22
	3	156	LRSSFLLLLLVSASWLFGLLAVN	178	PRIMARY	23
	4	188	HAGLCGLQGLAVLLLFCVLNAD	209	PRIMARY	22