ORK06530

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK06530

Order Kazusa clone(s) from :

Accession No	AB209569
Product ID	ORK06530
Clone name	fk15444
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	PTPN2
cDNA sequence	DNA sequence (3345 bp) Predicted protein sequence (392 aa)
Description	Tyrosine-protein phosphatase non-receptor type 2 (EC 3.1.3.48) (T-cell protein-tyrosine phosphatase) (TCPTP).

Features of the cloned cDNA sequence

Description

Length: 3345 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Features of the protein sequence

Description

Length: 392 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92806	1.3e-164	100.0	protein tyrosin...	Homo sapiens
XP_001171488	7.3e-160	99.2	protein tyrosin...	Pan troglodytes
EAX01532	4.1e-149	100.0	protein tyrosin...	Homo sapiens
P17706	1e-148	99.7	Tyrosine-protei...	Homo sapiens
XP_001171474	1.7e-147	99.1	similar to prot...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR000242	44	51	PR00700	Protein-tyrosine phosphatase
	IPR000242	60	80	PR00700	Protein-tyrosine phosphatase
	IPR000242	147	164	PR00700	Protein-tyrosine phosphatase
	IPR000242	188	206	PR00700	Protein-tyrosine phosphatase
	IPR000242	219	234	PR00700	Protein-tyrosine phosphatase
	IPR000242	235	245	PR00700	Protein-tyrosine phosphatase
HMMPfam	IPR000242	32	251	PF00102	Protein-tyrosine phosphatase
HMMSmart	IPR000242	2	254	SM00194	Protein-tyrosine phosphatase
HMMSmart	IPR003595	148	251	SM00404	Protein-tyrosine phosphatase
ProfileScan	IPR000242	32	252	PS50055	Protein-tyrosine phosphatase
ProfileScan	IPR000387	167	243	PS50056	Protein-tyrosine phosphatase
ScanRegExp	IPR000387	191	203	PS00383	Protein-tyrosine phosphatase

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	366	LTKMGFMSVILVGAFVGWTLFFQ	388	PRIMARY	23