ORK06875

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK06875

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Accession No	AB209026
Product ID	ORK06875
Clone name	hh00332
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	SLC37A4
cDNA sequence	DNA sequence (5861 bp) Predicted protein sequence (195 aa)
Description	Glucose-6-phosphate translocase (Glucose-5-phosphate transporter) (Solute carrier family 37 member 4).

Features of the cloned cDNA sequence

Description

Length: 5861 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: YES

Warning for coding interruption : YES

Integrity of 3' end

Length of 3'UTR	2363 bp
Genome contig ID	gi51511727r_118300276
PolyA signal sequence (ATTAAA,-22)	+--------+--------+----*----+---- CTTGTTATAGAAGATTAAAACTAGATTTGATACTG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AACACTGTCAGTGATTCATTTTTTCAAAGTGAGACAGCTTCCTTGGGAAA

Features of the protein sequence

Description

Length: 195 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92263	1.4e-83	100.0	solute carrier ...	Homo sapiens
EAW67434	4.1e-61	90.6	solute carrier ...	Homo sapiens
AAF16691	6.9e-61	95.0	PRO0685 [Homo s...	Homo sapiens
BAG62334	3.4e-54	95.1	unnamed protein...	Homo sapiens
BAG60630	3.8e-54	95.1	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR011701	29	162	PF07690	Major facilitator superfamily MFS_1
ScanRegExp	IPR000849	33	49	PS00942	GlpT transporter

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	37	WWAILSTSMNLAGGLGPILATIL	59	SECONDARY	23
	2	68	TLALSGALCVVVSFLCLLLIHNE	90	PRIMARY	23
	3	120	LLLSPYLWVLSTGYLVVFGVKTC	142	SECONDARY	23