ORK07659

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK07659

Order Kazusa clone(s) from :

Accession No	AB209058
Product ID	ORK07659
Clone name	hj02221
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	HLA-DPA1
cDNA sequence	DNA sequence (5008 bp) Predicted protein sequence (144 aa)
Description	Homo sapiens mRNA for HLA-DPA1 protein variant protein.

Features of the cloned cDNA sequence

Description

Length: 5008 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: YES

Warning for coding interruption : YES

Features of the protein sequence

Description

Length: 144 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92295	1.6e-65	100.0	HLA-DPA1 protei...	Homo sapiens
AAH09956	1.8e-49	92.1	HLA-DPA1 protei...	Homo sapiens
CAM25763	3.7e-48	89.7	major histocomp...	Homo sapiens
P20036	4.4e-48	89.7	HLA class II hi...	Homo sapiens
XP_518390	8.9e-48	88.9	similar to HLA-...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001003	39	119	PF00993	MHC class II

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	12	FHIRAVILRALSLAFLLSLRGAG	34	PRIMARY	23
SOSUI2	2	110	QRSNHTQAANGTAYLCLFLCSP	131	SECONDARY	22