ORK07229

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK07229

Order Kazusa clone(s) from :

Accession No	AB209699
Product ID	ORK07229
Clone name	pf06787
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	TSPAN31
cDNA sequence	DNA sequence (7533 bp) Predicted protein sequence (205 aa)
Description	Tetraspanin-31 (Tspan-31) (Sarcoma amplified sequence).

Features of the cloned cDNA sequence

Description

Length: 7533 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Features of the protein sequence

Description

Length: 205 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92936	9.7e-82	100.0	sarcoma amplifi...	Homo sapiens
XP_001116429	1.2e-66	99.4	similar to sarc...	Macaca mulatta
XP_001116434	3e-60	98.7	similar to sarc...	Macaca mulatta
Q12999	4.7e-56	99.3	Tetraspanin-31;...	Homo sapiens
XP_001116442	4.7e-56	99.3	similar to sarc...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR000301	41	64	PR00259	CD9/CD37/CD63 antigen
	IPR000301	72	98	PR00259	CD9/CD37/CD63 antigen
	IPR000301	99	127	PR00259	CD9/CD37/CD63 antigen
HMMPfam	IPR000301	38	187	PF00335	CD9/CD37/CD63 antigen

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	42	ALCALNVVYMLVSLLLIGVAAWG	64	PRIMARY	23
	2	72	SIHIIGGVIAVGVFLLLIAVAGL	94	PRIMARY	23
	3	106	FFYMIILGLVFIFQFVISCSCLA	128	PRIMARY	23