Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK00055
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Accession No
Product ID ORK00055
Clone name ah04440
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol SETD1A
cDNA sequence DNA sequence (5919 bp)
Predicted protein sequence (1709 aa)
Flexi ORF Clone FXC00055
Description Histone-lysine N-methyltransferase, H3 lysine-4 specific SET1 (EC (Set1/Ash2 histone methyltransferase complex subunit SET1) (SET domain-containing protein 1A).
Features of the cloned cDNA sequence

Length: 5919 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 637 bp
Genome contig ID gi51511732f_30777538
PolyA signal sequence
Flanking genome sequence
(125946 - 125995)

Features of the protein sequence

Length: 1709 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
O15047 0 100.0 Histone-lysine ...
Homo sapiens
XP_523492 0 99.5 SET domain cont...
Pan troglodytes
XP_001915080 0 93.4 SET domain cont...
Equus caballus
XP_001251265 0 92.5 similar to SET ...
Bos taurus
XP_001364653 0 79.5 similar to SET ...
Monodelphis dom...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000504 112 169 PF00076 RNA recognition motif
IPR001214 1564 1693 PF00856 SET
HMMSmart IPR000504 97 170 SM00360 RNA recognition motif
IPR001214 1570 1693 SM00317 SET
IPR003616 1693 1709 SM00508 Post-SET zinc-binding region
ProfileScan IPR000504 86 174 PS50102 RNA recognition motif
IPR001214 1569 1691 PS50280 SET
IPR003616 1693 1709 PS50868 Post-SET zinc-binding region
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