Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK00144
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Accession No
Product ID ORK00144
Clone name ha04610
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of th ...
Symbol NUP210
cDNA sequence DNA sequence (6814 bp)
Predicted protein sequence (1891 aa)
Flexi ORF Clone FXC00144
Description Nuclear pore membrane glycoprotein 210 precursor (POM210) (Nuclear pore protein gp210).
Features of the cloned cDNA sequence

Length: 6814 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 1044 bp
Genome contig ID gi89161205r_13233137
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
AGGCCCTAGAGCCCGGCCTGGGCCAATGATGGAGG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
GCGGCCGCCAGCCCAGGGCCTGCCCATCCAGAAGGGACTCCCCAGGGCCT

Features of the protein sequence

Length: 1891 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAG10397 0 100.0 nucleoporin 210...
synthetic construct
EAW64152 0 99.7 nucleoporin 210...
Homo sapiens
Q8TEM1 0 99.7 Nuclear pore me...
Homo sapiens
EAW64151 0 99.6 nucleoporin 210...
Homo sapiens
XP_001083137 0 97.2 similar to nucl...
Macaca mulatta
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR003343 1081 1156 PF02368 Bacterial Ig-like
HMMSmart IPR003343 1081 1156 SM00635 Bacterial Ig-like

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 10 RGLLLLTLSVLLAAGPSA 27 SECONDARY 18
2 1485 ELSGAMVVGDVLCLATVLTSLEG 1507 PRIMARY 23
3 1526 TGVAVARAVGSVTVYYEVAGHLR 1548 SECONDARY 23
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