Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK00194
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Accession No
Product ID ORK00194
Clone name ah00154
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol IFT172
cDNA sequence DNA sequence (5419 bp)
Predicted protein sequence (1786 aa)
Flexi ORF Clone FXC00194
Description selective LIM binding factor homolog
Features of the cloned cDNA sequence

Length: 5419 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: YES
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 58 bp
Genome contig ID gi89161199r_27420745
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Features of the protein sequence

Length: 1786 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9UG01 0 100.0 Intraflagellar ...
Homo sapiens
EAX00571 0 99.8 intraflagellar ...
Homo sapiens
XP_001097501 0 99.1 similar to sele...
Macaca mulatta
XP_001502238 0 95.9 similar to intr...
Equus caballus
EDL37361 0 95.7 intraflagellar ...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001680 44 81 PF00400 WD40 repeat
HMMSmart IPR001680 39 81 SM00320 WD40 repeat
IPR001680 92 131 SM00320 WD40 repeat
IPR001680 139 176 SM00320 WD40 repeat
IPR001680 178 217 SM00320 WD40 repeat
IPR001680 223 260 SM00320 WD40 repeat
IPR001680 262 304 SM00320 WD40 repeat
IPR001680 316 351 SM00320 WD40 repeat
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