Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK00341
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | |
|---|---|
| Product ID | ORK00341 |
| Clone name | ef00973 |
| Vector information |
The cDNA fragment was inserted at the XhoI-SacI site
of the ...
|
| Symbol | LAMC1 |
| cDNA sequence | DNA sequence (7858 bp) Predicted protein sequence (1684 aa) |
|
HaloTag ORF Clone |
FHC00341
|
| Flexi ORF Clone | FXC00341 |
| Description | Laminin subunit gamma-1 precursor (Laminin B2 chain). |
Length: 7858 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: YES Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 2802 bp |
|---|---|
| Genome contig ID | gi89161185f_181159249 |
| PolyA signal sequence (AATAAA,-28) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (222102 - 222151) |
----+----*----+----*----+----*----+----*----+----* |
Length: 1684 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| BlastProDom | IPR000034 | 552 | 679 | PD003031 | Laminin B |
| FPrintScan | IPR002049 | 973 | 991 | PR00011 | EGF-like |
| IPR002049 | 1022 | 1040 | PR00011 | EGF-like | |
| IPR002049 | 1041 | 1069 | PR00011 | EGF-like | |
| IPR002049 | 1069 | 1087 | PR00011 | EGF-like | |
| HMMPfam | IPR008211 | 125 | 359 | PF00055 | Laminin |
| IPR002049 | 361 | 414 | PF00053 | EGF-like | |
| IPR002049 | 417 | 470 | PF00053 | EGF-like | |
| IPR002049 | 473 | 517 | PF00053 | EGF-like | |
| IPR002049 | 520 | 567 | PF00053 | EGF-like | |
| IPR000034 | 633 | 763 | PF00052 | Laminin B | |
| IPR002049 | 799 | 845 | PF00053 | EGF-like | |
| IPR002049 | 848 | 900 | PF00053 | EGF-like | |
| IPR002049 | 903 | 956 | PF00053 | EGF-like | |
| IPR002049 | 959 | 1007 | PF00053 | EGF-like | |
| IPR002049 | 1010 | 1055 | PF00053 | EGF-like | |
| IPR002049 | 1058 | 1103 | PF00053 | EGF-like | |
| HMMSmart | IPR008211 | 119 | 359 | SM00136 | Laminin |
| IPR002049 | 361 | 414 | SM00180 | EGF-like | |
| IPR006210 | 413 | 455 | SM00181 | EGF | |
| IPR002049 | 417 | 470 | SM00180 | EGF-like | |
| IPR002049 | 473 | 517 | SM00180 | EGF-like | |
| IPR006210 | 474 | 518 | SM00181 | EGF | |
| IPR006210 | 519 | 568 | SM00181 | EGF | |
| IPR002049 | 520 | 567 | SM00180 | EGF-like | |
| IPR000034 | 628 | 753 | SM00281 | Laminin B | |
| IPR006210 | 795 | 827 | SM00181 | EGF | |
| IPR002049 | 799 | 845 | SM00180 | EGF-like | |
| IPR006210 | 844 | 880 | SM00181 | EGF | |
| IPR002049 | 848 | 900 | SM00180 | EGF-like | |
| IPR002049 | 903 | 956 | SM00180 | EGF-like | |
| IPR006210 | 916 | 957 | SM00181 | EGF | |
| IPR002049 | 959 | 1007 | SM00180 | EGF-like | |
| IPR006210 | 1006 | 1041 | SM00181 | EGF | |
| IPR002049 | 1010 | 1055 | SM00180 | EGF-like | |
| IPR006210 | 1042 | 1088 | SM00181 | EGF | |
| IPR002049 | 1058 | 1103 | SM00180 | EGF-like | |
| ProfileScan | IPR008211 | 121 | 360 | PS51117 | Laminin |
| IPR002049 | 361 | 416 | PS50027 | EGF-like | |
| IPR002049 | 417 | 472 | PS50027 | EGF-like | |
| IPR002049 | 473 | 519 | PS50027 | EGF-like | |
| IPR002049 | 520 | 569 | PS50027 | EGF-like | |
| IPR000034 | 596 | 764 | PS51115 | Laminin B | |
| IPR002049 | 799 | 847 | PS50027 | EGF-like | |
| IPR002049 | 848 | 902 | PS50027 | EGF-like | |
| IPR002049 | 903 | 958 | PS50027 | EGF-like | |
| IPR002049 | 959 | 1009 | PS50027 | EGF-like | |
| IPR002049 | 1010 | 1057 | PS50027 | EGF-like | |
| IPR002049 | 1058 | 1105 | PS50027 | EGF-like | |
| ScanRegExp | IPR013032 | 380 | 391 | PS00022 | EGF-like region |
| IPR002049 | 380 | 414 | PS01248 | EGF-like | |
| IPR002049 | 442 | 475 | PS01248 | EGF-like | |
| IPR013032 | 491 | 502 | PS00022 | EGF-like region | |
| IPR002049 | 491 | 522 | PS01248 | EGF-like | |
| IPR013032 | 538 | 549 | PS00022 | EGF-like region | |
| IPR002049 | 538 | 572 | PS01248 | EGF-like | |
| IPR013032 | 765 | 776 | PS00022 | EGF-like region | |
| IPR013032 | 765 | 779 | PS01186 | EGF-like region | |
| IPR002049 | 765 | 799 | PS01248 | EGF-like | |
| IPR013032 | 815 | 826 | PS00022 | EGF-like region | |
| IPR002049 | 815 | 850 | PS01248 | EGF-like | |
| IPR002049 | 867 | 903 | PS01248 | EGF-like | |
| IPR002049 | 924 | 959 | PS01248 | EGF-like | |
| IPR013032 | 980 | 991 | PS00022 | EGF-like region | |
| IPR002049 | 980 | 1012 | PS01248 | EGF-like | |
| IPR013032 | 1029 | 1040 | PS00022 | EGF-like region | |
| IPR002049 | 1029 | 1060 | PS01248 | EGF-like | |
| IPR013032 | 1076 | 1087 | PS00022 | EGF-like region | |
| IPR013032 | 1076 | 1090 | PS01186 | EGF-like region | |
| IPR002049 | 1076 | 1109 | PS01248 | EGF-like |
