Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK00982
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Accession No AB210009
Product ID ORK00982
Clone name fh00134
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol PPFIA2
cDNA sequence DNA sequence (5405 bp)
Predicted protein sequence (1258 aa)
Flexi ORF Clone FXC00982
Description Liprin-alpha-2 (Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-2) (PTPRF-interacting protein alpha-2).
Features of the cloned cDNA sequence

Length: 5405 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 1365 bp
Genome contig ID gi89161190r_80076195
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
CCCTTTCCATTGTCAATAAAAAAAATAATAATTCC
Flanking genome sequence
(99982 - 99933)
----+----*----+----*----+----*----+----*----+----*
AGTTCTCTGTTTAAGCTTTGTTTTCTAGTCACATAAGGCTCGACAATTTA

Features of the protein sequence

Length: 1258 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAE06091 0 100.0 PPFIA2 variant ...
Homo sapiens
BAG10219 0 100.0 liprin-alpha-2 ...
synthetic construct
XP_001088353 0 99.8 similar to PTPR...
Macaca mulatta
NP_003616 0 100.0 liprin-alpha-2 ...
Homo sapiens
O75334 0 99.6 Liprin-alpha-2;...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001660 907 973 PF00536 Sterile alpha motif SAM
IPR001660 1029 1093 PF00536 Sterile alpha motif SAM
IPR011510 1116 1188 PF07647 Sterile alpha motif homology 2
HMMSmart IPR001660 906 975 SM00454 Sterile alpha motif SAM
IPR001660 1028 1095 SM00454 Sterile alpha motif SAM
IPR001660 1116 1188 SM00454 Sterile alpha motif SAM
ProfileScan IPR001660 909 975 PS50105 Sterile alpha motif SAM
IPR001660 1038 1095 PS50105 Sterile alpha motif SAM
IPR001660 1119 1188 PS50105 Sterile alpha motif SAM
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