Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK01193
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | AB210027 |
|---|---|
| Product ID | ORK01193 |
| Clone name | hh01833 |
| Vector information |
The cDNA fragment was inserted at the SalI-NotI site of
the ...
|
| Symbol | LAMA4 |
| cDNA sequence | DNA sequence (6027 bp) Predicted protein sequence (1852 aa) |
|
HaloTag ORF Clone |
FHC01193
|
| Flexi ORF Clone | FXC01193 |
| Description | Laminin subunit alpha-4 precursor. |
Length: 6027 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: NO Warning for coding interruption : YES Integrity of 3' end
| Length of 3'UTR | 305 bp |
|---|---|
| Genome contig ID | gi89161210r_112437028 |
| PolyA signal sequence (AATAAA,-24) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (100000 - 99951) |
----+----*----+----*----+----*----+----*----+----* |
Length: 1852 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| HMMPfam | IPR002049 | 111 | 158 | PF00053 | EGF-like |
| IPR002049 | 161 | 213 | PF00053 | EGF-like | |
| IPR002049 | 216 | 267 | PF00053 | EGF-like | |
| IPR009254 | 324 | 584 | PF06008 | Laminin I | |
| IPR010307 | 763 | 890 | PF06009 | Laminin II | |
| IPR012680 | 904 | 1043 | PF02210 | Laminin G | |
| IPR012680 | 1108 | 1239 | PF02210 | Laminin G | |
| IPR012680 | 1292 | 1408 | PF02210 | Laminin G | |
| IPR012680 | 1528 | 1655 | PF02210 | Laminin G | |
| IPR012680 | 1705 | 1830 | PF02210 | Laminin G | |
| HMMSmart | IPR002049 | 111 | 158 | SM00180 | EGF-like |
| IPR006210 | 119 | 159 | SM00181 | EGF | |
| IPR002049 | 161 | 213 | SM00180 | EGF-like | |
| IPR006210 | 174 | 214 | SM00181 | EGF | |
| IPR002049 | 216 | 267 | SM00180 | EGF-like | |
| IPR006210 | 230 | 268 | SM00181 | EGF | |
| IPR001791 | 886 | 1043 | SM00282 | Laminin G | |
| IPR001791 | 1100 | 1239 | SM00282 | Laminin G | |
| IPR001791 | 1284 | 1408 | SM00282 | Laminin G | |
| IPR001791 | 1520 | 1655 | SM00282 | Laminin G | |
| IPR001791 | 1697 | 1830 | SM00282 | Laminin G | |
| ProfileScan | IPR002049 | 111 | 160 | PS50027 | EGF-like |
| IPR002049 | 161 | 215 | PS50027 | EGF-like | |
| IPR002049 | 216 | 269 | PS50027 | EGF-like | |
| IPR001791 | 862 | 1064 | PS50025 | Laminin G | |
| IPR001791 | 1076 | 1256 | PS50025 | Laminin G | |
| IPR001791 | 1263 | 1431 | PS50025 | Laminin G | |
| IPR001791 | 1498 | 1669 | PS50025 | Laminin G | |
| IPR001791 | 1676 | 1849 | PS50025 | Laminin G | |
| ScanRegExp | IPR002049 | 127 | 161 | PS01248 | EGF-like |
| IPR013032 | 184 | 195 | PS00022 | EGF-like region | |
| IPR002049 | 184 | 218 | PS01248 | EGF-like | |
| IPR002049 | 238 | 272 | PS01248 | EGF-like |
