Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01267
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Accession No
Product ID ORK01267
Clone name fj15914
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol PCDHA1
cDNA sequence DNA sequence (4589 bp)
Predicted protein sequence (957 aa)
Flexi ORF Clone FXC01267
Description protocadherin alpha 1
Features of the cloned cDNA sequence

Length: 4589 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 1642 bp
Genome contig ID gi51511721f_140045966
PolyA signal sequence
(AGTAAA,-22)
+----*----+----*----+----*----+----
GTATGAAAGACACAGTAAAATTTCTTTCTTAAATC
Flanking genome sequence
(325384 - 325433)
----+----*----+----*----+----*----+----*----+----*
AAGATACTGGTGATTCAAGGAATTTTATTTATGGTCCAGCCAAGAGCCAT

Features of the protein sequence

Length: 957 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9Y5I3 0 100.0 Protocadherin a...
Homo sapiens
EAW61991 0 99.7 hCG1982192, iso...
Homo sapiens
Q5DRF5 0 98.6 Protocadherin a...
Pan troglodytes
BAE43856 0 96.2 Protocadherin a...
Macaca fuscata
XP_001918099 0 88.0 similar to Prot...
Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR002126 80 99 PR00205 Cadherin
IPR002126 249 278 PR00205 Cadherin
IPR002126 427 439 PR00205 Cadherin
IPR002126 441 460 PR00205 Cadherin
IPR002126 460 473 PR00205 Cadherin
IPR002126 520 546 PR00205 Cadherin
IPR002126 554 571 PR00205 Cadherin
HMMPfam IPR013164 36 119 PF08266 Cadherin
IPR002126 145 240 PF00028 Cadherin
IPR002126 254 348 PF00028 Cadherin
IPR002126 362 453 PF00028 Cadherin
IPR002126 467 563 PF00028 Cadherin
IPR002126 580 677 PF00028 Cadherin
HMMSmart IPR002126 54 138 SM00112 Cadherin
IPR002126 162 247 SM00112 Cadherin
IPR002126 271 355 SM00112 Cadherin
IPR002126 379 460 SM00112 Cadherin
IPR002126 484 570 SM00112 Cadherin
IPR002126 601 683 SM00112 Cadherin
ProfileScan IPR002126 35 140 PS50268 Cadherin
IPR002126 164 249 PS50268 Cadherin
IPR002126 250 357 PS50268 Cadherin
IPR002126 358 462 PS50268 Cadherin
IPR002126 463 572 PS50268 Cadherin
IPR002126 595 685 PS50268 Cadherin
ScanRegExp IPR002126 128 138 PS00232 Cadherin
IPR002126 237 247 PS00232 Cadherin
IPR002126 345 355 PS00232 Cadherin
IPR002126 450 460 PS00232 Cadherin
IPR002126 560 570 PS00232 Cadherin

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 15 GLGARDLLLWLLLLAAWEVGSGQ 37 SECONDARY 23
2 701 VDVNVYLIIAICAVSSLLVLTLL 723 PRIMARY 23
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