Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01461
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Accession No
Product ID ORK01461
Clone name bm05962
Vector information
The cDNA fragment was inserted at the XhoI-SacI site of the ...
Symbol DDX56
cDNA sequence DNA sequence (1752 bp)
Predicted protein sequence (558 aa)
Flexi ORF Clone FXC01461
Description Probable ATP-dependent RNA helicase DDX56 (EC 3.6.1.-) (DEAD box protein 56) (ATP-dependent 61 kDa nucleolar RNA helicase) (DEAD-box protein 21).
Features of the cloned cDNA sequence

Length: 1752 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: YES
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 74 bp
Genome contig ID gi89161213r_44472052
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Features of the protein sequence

Length: 558 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9NY93 0 100.0 Probable ATP-de...
Homo sapiens
EAW61095 0 99.8 DEAD (Asp-Glu-A...
Homo sapiens
BAB14238 0 99.8 unnamed protein...
Homo sapiens
XP_001145021 0 99.6 DEAD (Asp-Glu-A...
Pan troglodytes
BAD96382 0 99.6 DEAD (Asp-Glu-A...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR011545 42 218 PF00270 DNA/RNA helicase
IPR001650 357 391 PF00271 DNA/RNA helicase
HMMSmart IPR014001 37 245 SM00487 DEAD-like helicases
IPR001650 283 391 SM00490 DNA/RNA helicase
ProfileScan IPR014014 18 46 PS51195 RNA helicase
IPR014021 49 229 PS51192 Helicase
IPR001650 241 435 PS51194 DNA/RNA helicase
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