Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK01782
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | |
|---|---|
| Product ID | ORK01782 |
| Clone name | sj08759 |
| Vector information |
The cDNA fragment was inserted at the SalI-NotI site of
the ...
|
| Symbol | LAMB3 |
| cDNA sequence | DNA sequence (4249 bp) Predicted protein sequence (1217 aa) |
|
HaloTag ORF Clone |
FHC01782
|
| Flexi ORF Clone | FXC01782 |
| Description | laminin, beta 3 |
Length: 4249 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: NO Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 288 bp |
|---|---|
| Genome contig ID | gi89161185r_207754951 |
| PolyA signal sequence (None) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (100000 - 99951) |
----+----*----+----*----+----*----+----*----+----* |
Length: 1217 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| FPrintScan | IPR002049 | 437 | 455 | PR00011 | EGF-like |
| IPR002049 | 538 | 556 | PR00011 | EGF-like | |
| IPR002049 | 562 | 590 | PR00011 | EGF-like | |
| IPR002049 | 591 | 609 | PR00011 | EGF-like | |
| HMMPfam | IPR008211 | 71 | 293 | PF00055 | Laminin |
| IPR002049 | 295 | 358 | PF00053 | EGF-like | |
| IPR002049 | 361 | 412 | PF00053 | EGF-like | |
| IPR002049 | 424 | 473 | PF00053 | EGF-like | |
| IPR002049 | 476 | 523 | PF00053 | EGF-like | |
| IPR002049 | 526 | 576 | PF00053 | EGF-like | |
| IPR002049 | 579 | 623 | PF00053 | EGF-like | |
| HMMSmart | IPR008211 | 65 | 293 | SM00136 | Laminin |
| IPR002049 | 295 | 358 | SM00180 | EGF-like | |
| IPR002049 | 361 | 421 | SM00180 | EGF-like | |
| IPR002049 | 424 | 473 | SM00180 | EGF-like | |
| IPR002049 | 476 | 523 | SM00180 | EGF-like | |
| IPR002049 | 526 | 576 | SM00180 | EGF-like | |
| IPR002049 | 579 | 623 | SM00180 | EGF-like | |
| ProfileScan | IPR008211 | 67 | 294 | PS51117 | Laminin |
| IPR002049 | 295 | 360 | PS50027 | EGF-like | |
| IPR002049 | 361 | 423 | PS50027 | EGF-like | |
| IPR002049 | 424 | 475 | PS50027 | EGF-like | |
| IPR002049 | 476 | 525 | PS50027 | EGF-like | |
| IPR002049 | 526 | 578 | PS50027 | EGF-like | |
| IPR002049 | 579 | 625 | PS50027 | EGF-like | |
| ScanRegExp | IPR013032 | 324 | 335 | PS00022 | EGF-like region |
| IPR002049 | 324 | 358 | PS01248 | EGF-like | |
| IPR002049 | 388 | 424 | PS01248 | EGF-like | |
| IPR013032 | 444 | 455 | PS00022 | EGF-like region | |
| IPR002049 | 444 | 478 | PS01248 | EGF-like | |
| IPR013032 | 496 | 507 | PS00022 | EGF-like region | |
| IPR002049 | 496 | 528 | PS01248 | EGF-like | |
| IPR013032 | 545 | 556 | PS00022 | EGF-like region | |
| IPR013032 | 545 | 556 | PS01186 | EGF-like region | |
| IPR013032 | 598 | 609 | PS00022 | EGF-like region | |
| IPR002049 | 598 | 629 | PS01248 | EGF-like |
