Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01788
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Accession No AK226079
Product ID ORK01788
Clone name pf09883
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol F5
cDNA sequence DNA sequence (6883 bp)
Predicted protein sequence (2245 aa)
Flexi ORF Clone FXC01788
Description Coagulation factor V precursor (Activated protein C cofactor) [Contains: Coagulation factor V heavy chain; Coagulation factor V light chain].
Features of the cloned cDNA sequence

Length: 6883 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: YES
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 145 bp
Genome contig ID gi89161185r_167650030
PolyA signal sequence
(AATAAA,-18)		 
+----*----+----*----+----*----+----
TTTCTTTTCTATTAGTGAATAAAATTTTATACAAG
Flanking genome sequence
(100000 - 99951)		 
----+----*----+----*----+----*----+----*----+----*
AAGCTTTTATAATGTAACTCCTTGCTACCAGTAAGTAAGATAATGGCTAT

Features of the protein sequence

Length: 2245 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAB59401 0 100.0 coagulation fac...
 Homo sapiens
CAB16748 0 99.9 coagulation fac...
 Homo sapiens
P12259 0 99.9 Coagulation fac...
 Homo sapiens
AAB59532 0 99.7 factor V precus...
 Homo sapiens
AAA52424 0 99.7 coagulation fac...
 Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR011707 106 139 PF07732 Multicopper oxidase
IPR009271 1098 1106 PF06049 Coagulation factor V LSPD
IPR009271 1169 1177 PF06049 Coagulation factor V LSPD
IPR009271 1206 1214 PF06049 Coagulation factor V LSPD
IPR009271 1215 1223 PF06049 Coagulation factor V LSPD
IPR009271 1224 1232 PF06049 Coagulation factor V LSPD
IPR009271 1233 1241 PF06049 Coagulation factor V LSPD
IPR009271 1251 1259 PF06049 Coagulation factor V LSPD
IPR009271 1260 1268 PF06049 Coagulation factor V LSPD
IPR009271 1269 1277 PF06049 Coagulation factor V LSPD
IPR009271 1278 1286 PF06049 Coagulation factor V LSPD
IPR009271 1296 1304 PF06049 Coagulation factor V LSPD
IPR009271 1305 1313 PF06049 Coagulation factor V LSPD
IPR009271 1314 1322 PF06049 Coagulation factor V LSPD
IPR009271 1323 1331 PF06049 Coagulation factor V LSPD
IPR009271 1341 1349 PF06049 Coagulation factor V LSPD
IPR009271 1350 1358 PF06049 Coagulation factor V LSPD
IPR009271 1359 1367 PF06049 Coagulation factor V LSPD
IPR009271 1377 1385 PF06049 Coagulation factor V LSPD
IPR009271 1386 1394 PF06049 Coagulation factor V LSPD
IPR009271 1395 1403 PF06049 Coagulation factor V LSPD
IPR009271 1404 1412 PF06049 Coagulation factor V LSPD
IPR009271 1413 1421 PF06049 Coagulation factor V LSPD
IPR009271 1422 1430 PF06049 Coagulation factor V LSPD
IPR009271 1431 1439 PF06049 Coagulation factor V LSPD
IPR009271 1449 1457 PF06049 Coagulation factor V LSPD
IPR009271 1458 1466 PF06049 Coagulation factor V LSPD
IPR009271 1467 1475 PF06049 Coagulation factor V LSPD
IPR009271 1476 1484 PF06049 Coagulation factor V LSPD
IPR009271 1503 1511 PF06049 Coagulation factor V LSPD
IPR000421 1943 2079 PF00754 Coagulation factor 5/8 type
IPR000421 2102 2239 PF00754 Coagulation factor 5/8 type
HMMSmart IPR000421 1927 2082 SM00231 Coagulation factor 5/8 type
IPR000421 2086 2242 SM00231 Coagulation factor 5/8 type
ProfileScan IPR000421 1928 2082 PS50022 Coagulation factor 5/8 type
IPR000421 2087 2242 PS50022 Coagulation factor 5/8 type
ScanRegExp IPR002355 325 345 PS00079 Multicopper oxidase
IPR002355 1901 1921 PS00079 Multicopper oxidase
IPR000421 1968 2001 PS01285 Coagulation factor 5/8 type
IPR000421 2066 2082 PS01286 Coagulation factor 5/8 type
IPR000421 2132 2161 PS01285 Coagulation factor 5/8 type
IPR000421 2226 2242 PS01286 Coagulation factor 5/8 type
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