Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK01829
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | AB209912 |
|---|---|
| Product ID | ORK01829 |
| Clone name | ej00565 |
| Vector information |
The cDNA fragment was inserted at the XhoI-SacI site
of the ...
|
| Symbol | THBS1 |
| cDNA sequence | DNA sequence (3904 bp) Predicted protein sequence (1225 aa) |
|
HaloTag ORF Clone |
FHC01829
|
| Flexi ORF Clone | FXC01829 |
| Description | Thrombospondin-1 precursor. |
Length: 3904 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: YES Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 226 bp |
|---|---|
| Genome contig ID | gi51511731f_37560586 |
| PolyA signal sequence (AATGAA,-25) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (114504 - 114553) |
----+----*----+----*----+----*----+----*----+----* |
Length: 1225 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| FPrintScan | IPR008085 | 491 | 504 | PR01705 | Thrombospondin |
| IPR008085 | 509 | 520 | PR01705 | Thrombospondin | |
| IPR008085 | 528 | 539 | PR01705 | Thrombospondin | |
| HMMPfam | IPR001007 | 373 | 427 | PF00093 | von Willebrand factor |
| IPR000884 | 438 | 483 | PF00090 | Thrombospondin | |
| IPR000884 | 494 | 544 | PF00090 | Thrombospondin | |
| IPR000884 | 551 | 601 | PF00090 | Thrombospondin | |
| IPR006209 | 705 | 744 | PF00008 | EGF-like | |
| IPR003367 | 782 | 794 | PF02412 | Thrombospondin type 3 repeat | |
| IPR003367 | 818 | 830 | PF02412 | Thrombospondin type 3 repeat | |
| IPR003367 | 841 | 853 | PF02412 | Thrombospondin type 3 repeat | |
| IPR003367 | 854 | 869 | PF02412 | Thrombospondin type 3 repeat | |
| IPR003367 | 877 | 889 | PF02412 | Thrombospondin type 3 repeat | |
| IPR003367 | 900 | 912 | PF02412 | Thrombospondin type 3 repeat | |
| IPR003367 | 915 | 930 | PF02412 | Thrombospondin type 3 repeat | |
| IPR003367 | 938 | 950 | PF02412 | Thrombospondin type 3 repeat | |
| IPR003367 | 951 | 966 | PF02412 | Thrombospondin type 3 repeat | |
| IPR003367 | 974 | 986 | PF02412 | Thrombospondin type 3 repeat | |
| IPR003367 | 987 | 1002 | PF02412 | Thrombospondin type 3 repeat | |
| IPR008859 | 1027 | 1225 | PF05735 | Thrombospondin | |
| HMMSmart | IPR003129 | 79 | 276 | SM00210 | Laminin G |
| IPR001007 | 373 | 427 | SM00214 | von Willebrand factor | |
| IPR000884 | 437 | 484 | SM00209 | Thrombospondin | |
| IPR000884 | 493 | 545 | SM00209 | Thrombospondin | |
| IPR000884 | 550 | 602 | SM00209 | Thrombospondin | |
| IPR001881 | 597 | 642 | SM00179 | EGF-like calcium-binding | |
| IPR006210 | 605 | 642 | SM00181 | EGF | |
| IPR001881 | 643 | 700 | SM00179 | EGF-like calcium-binding | |
| IPR006210 | 646 | 700 | SM00181 | EGF | |
| IPR006210 | 704 | 745 | SM00181 | EGF | |
| ProfileScan | IPR001007 | 371 | 428 | PS50184 | von Willebrand factor |
| IPR000884 | 434 | 484 | PS50092 | Thrombospondin | |
| IPR000884 | 490 | 545 | PS50092 | Thrombospondin | |
| IPR000884 | 547 | 602 | PS50092 | Thrombospondin | |
| IPR000742 | 602 | 642 | PS50026 | EGF-like | |
| IPR000742 | 701 | 745 | PS50026 | EGF-like | |
| ScanRegExp | IPR001007 | 391 | 427 | PS01208 | von Willebrand factor |
| IPR013032 | 731 | 744 | PS01186 | EGF-like region |
Prediction of transmembrane (TM) segments| Method | No. | N terminal | transmembrane region | C terminal | type | length | SOSUI2 | 1 | 55 | TMGLAWGLGVLFLMHVCGTNRIP | 77 | PRIMARY | 23 |
|---|
