ORK01893

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK01893

Order Kazusa clone(s) from :

Accession No
Product ID	ORK01893
Clone name	ah06492
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	FGFRL1
cDNA sequence	DNA sequence (5219 bp) Predicted protein sequence (519 aa)
HaloTag ORF Clone	FHC01893
Flexi ORF Clone	FXC01893
Description	Fibroblast growth factor receptor-like 1 precursor (FGF receptor-like protein 1) (Fibroblast growth factor receptor 5) (FGFR-like protein) (FGF homologous factor receptor).

Features of the cloned cDNA sequence

Description

Length: 5219 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : YES

Integrity of 3' end

Length of 3'UTR	1537 bp
Genome contig ID	gi89161207f_892958
PolyA signal sequence (None)	+--------+--------+----*----+---- GTATATTTAATTTATTTTGTTAAACATGAAAGTGC
Flanking genome sequence (117716 - 117765)	----+--------+--------+--------+--------+----* ATCCTTTCCCTCCAGGCTGGTGTTTCTGCCCATGTCTACATGCACGTGTG

Features of the protein sequence

Description

Length: 519 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q8N441	8.4e-184	100.0	Fibroblast grow...	Homo sapiens
AAK26742	3.4e-183	99.8	fibroblast grow...	Homo sapiens
AAK15273	1.8e-179	98.6	FGF homologous ...	Homo sapiens
XP_610839	1.5e-157	90.6	similar to fibr...	Bos taurus
Q7TQM3	2.3e-155	88.1	Fibroblast grow...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR013098	44	131	PF07679	Immunoglobulin I-set
	IPR013098	162	253	PF07679	Immunoglobulin I-set
	IPR013151	276	355	PF00047	Immunoglobulin
HMMSmart	IPR003599	51	132	SM00409	Immunoglobulin subtype
	IPR003598	57	121	SM00408	Immunoglobulin subtype 2
	IPR003599	172	254	SM00409	Immunoglobulin subtype
	IPR003598	178	243	SM00408	Immunoglobulin subtype 2
	IPR003599	268	371	SM00409	Immunoglobulin subtype
	IPR003598	274	360	SM00408	Immunoglobulin subtype 2
ProfileScan	IPR007110	44	130	PS50835	Immunoglobulin-like
	IPR007110	162	252	PS50835	Immunoglobulin-like
	IPR007110	261	369	PS50835	Immunoglobulin-like

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	19	SPLLLLLLPPLLLGAFPPAAAAR	41	SECONDARY	23
	2	349	GMYICLGANTMGYSFRSAFLTVL	371	SECONDARY	23
	3	392	WPVVIGIPAGAVFILGTLLLWLC	414	PRIMARY	23