Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK01903
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | |
|---|---|
| Product ID | ORK01903 |
| Clone name | ef06338 |
| Vector information |
The cDNA fragment was inserted at the XhoI-SacI site
of the ...
|
| Symbol | AGRN |
| cDNA sequence | DNA sequence (7311 bp) Predicted protein sequence (2059 aa) |
|
HaloTag ORF Clone |
FHC01903
|
| Flexi ORF Clone | FXC01903 |
| Description | Agrin precursor. |
Length: 7311 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: YES Warning for coding interruption : YES Integrity of 3' end
| Length of 3'UTR | 1131 bp |
|---|---|
| Genome contig ID | gi89161185f_845374 |
| PolyA signal sequence (AATAAA,-19) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (135983 - 136032) |
----+----*----+----*----+----*----+----*----+----* |
Length: 2059 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| FPrintScan | IPR002049 | 560 | 578 | PR00011 | EGF-like |
| IPR002049 | 819 | 837 | PR00011 | EGF-like | |
| IPR002049 | 873 | 891 | PR00011 | EGF-like | |
| HMMPfam | IPR004850 | 44 | 171 | PF03146 | Agrin NtA |
| IPR002350 | 211 | 256 | PF00050 | Proteinase inhibitor I1 | |
| IPR002350 | 286 | 331 | PF00050 | Proteinase inhibitor I1 | |
| IPR002350 | 356 | 403 | PF00050 | Proteinase inhibitor I1 | |
| IPR002350 | 430 | 475 | PF00050 | Proteinase inhibitor I1 | |
| IPR002350 | 504 | 548 | PF00050 | Proteinase inhibitor I1 | |
| IPR002350 | 569 | 613 | PF00050 | Proteinase inhibitor I1 | |
| IPR002350 | 634 | 678 | PF00050 | Proteinase inhibitor I1 | |
| IPR002350 | 719 | 764 | PF00050 | Proteinase inhibitor I1 | |
| IPR002049 | 807 | 858 | PF00053 | EGF-like | |
| IPR002049 | 861 | 905 | PF00053 | EGF-like | |
| IPR002350 | 937 | 983 | PF00050 | Proteinase inhibitor I1 | |
| IPR000082 | 1143 | 1254 | PF01390 | SEA | |
| IPR006209 | 1347 | 1380 | PF00008 | EGF-like | |
| IPR012679 | 1414 | 1545 | PF00054 | Laminin G | |
| IPR006209 | 1567 | 1599 | PF00008 | EGF-like | |
| IPR006209 | 1606 | 1638 | PF00008 | EGF-like | |
| IPR012679 | 1682 | 1813 | PF00054 | Laminin G | |
| IPR006209 | 1832 | 1866 | PF00008 | EGF-like | |
| IPR012679 | 1911 | 2042 | PF00054 | Laminin G | |
| HMMSmart | IPR003645 | 185 | 210 | SM00274 | Follistatin-like |
| IPR003884 | 185 | 258 | SM00057 | Factor I membrane attack complex | |
| IPR002350 | 210 | 256 | SM00280 | Proteinase inhibitor I1 | |
| IPR006210 | 261 | 300 | SM00181 | EGF | |
| IPR003645 | 261 | 285 | SM00274 | Follistatin-like | |
| IPR002350 | 285 | 331 | SM00280 | Proteinase inhibitor I1 | |
| IPR002350 | 360 | 403 | SM00280 | Proteinase inhibitor I1 | |
| IPR002350 | 429 | 475 | SM00280 | Proteinase inhibitor I1 | |
| IPR003645 | 481 | 503 | SM00274 | Follistatin-like | |
| IPR002350 | 503 | 548 | SM00280 | Proteinase inhibitor I1 | |
| IPR003884 | 550 | 615 | SM00057 | Factor I membrane attack complex | |
| IPR002350 | 568 | 613 | SM00280 | Proteinase inhibitor I1 | |
| IPR003645 | 615 | 638 | SM00274 | Follistatin-like | |
| IPR003884 | 616 | 680 | SM00057 | Factor I membrane attack complex | |
| IPR002350 | 626 | 678 | SM00280 | Proteinase inhibitor I1 | |
| IPR002350 | 718 | 764 | SM00280 | Proteinase inhibitor I1 | |
| IPR002049 | 807 | 858 | SM00180 | EGF-like | |
| IPR002049 | 861 | 905 | SM00180 | EGF-like | |
| IPR006210 | 872 | 906 | SM00181 | EGF | |
| IPR006210 | 914 | 952 | SM00181 | EGF | |
| IPR003645 | 914 | 936 | SM00274 | Follistatin-like | |
| IPR003884 | 914 | 985 | SM00057 | Factor I membrane attack complex | |
| IPR002350 | 936 | 983 | SM00280 | Proteinase inhibitor I1 | |
| IPR000082 | 1144 | 1266 | SM00200 | SEA | |
| IPR006210 | 1346 | 1381 | SM00181 | EGF | |
| IPR001881 | 1347 | 1381 | SM00179 | EGF-like calcium-binding | |
| IPR001791 | 1406 | 1542 | SM00282 | Laminin G | |
| IPR001881 | 1561 | 1600 | SM00179 | EGF-like calcium-binding | |
| IPR006210 | 1566 | 1600 | SM00181 | EGF | |
| IPR006210 | 1605 | 1639 | SM00181 | EGF | |
| IPR001791 | 1674 | 1810 | SM00282 | Laminin G | |
| IPR006210 | 1831 | 1867 | SM00181 | EGF | |
| IPR001881 | 1832 | 1867 | SM00179 | EGF-like calcium-binding | |
| IPR001791 | 1903 | 2039 | SM00282 | Laminin G | |
| ProfileScan | IPR004850 | 44 | 171 | PS51121 | Agrin NtA |
| IPR002049 | 807 | 860 | PS50027 | EGF-like | |
| IPR002049 | 861 | 907 | PS50027 | EGF-like | |
| IPR000082 | 1144 | 1266 | PS50024 | SEA | |
| IPR000742 | 1343 | 1381 | PS50026 | EGF-like | |
| IPR001791 | 1386 | 1562 | PS50025 | Laminin G | |
| IPR000742 | 1563 | 1600 | PS50026 | EGF-like | |
| IPR000742 | 1602 | 1639 | PS50026 | EGF-like | |
| IPR001791 | 1649 | 1832 | PS50025 | Laminin G | |
| IPR000742 | 1828 | 1867 | PS50026 | EGF-like | |
| IPR001791 | 1878 | 2056 | PS50025 | Laminin G | |
| ScanRegExp | IPR013032 | 826 | 837 | PS00022 | EGF-like region |
| IPR002049 | 826 | 861 | PS01248 | EGF-like | |
| IPR013032 | 880 | 891 | PS00022 | EGF-like region | |
| IPR001455 | 1135 | 1159 | PS01148 | SirA-like | |
| IPR013032 | 1369 | 1380 | PS00022 | EGF-like region | |
| IPR013032 | 1588 | 1599 | PS00022 | EGF-like region | |
| IPR013032 | 1627 | 1638 | PS00022 | EGF-like region | |
| IPR013032 | 1855 | 1866 | PS00022 | EGF-like region | |
| IPR013032 | 1855 | 1866 | PS01186 | EGF-like region |
