Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01913
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Accession No
Product ID ORK01913
Clone name ha00575
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of th ...
Symbol ATP13A2
cDNA sequence DNA sequence (3978 bp)
Predicted protein sequence (1180 aa)
Flexi ORF Clone FXC01913
Description Probable cation-transporting ATPase 13A2 (EC 3.6.3.-).
Features of the cloned cDNA sequence

Length: 3978 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 263 bp
Genome contig ID gi89161185r_17085040
PolyA signal sequence
(AATAAA,-25)
+----*----+----*----+----*----+----
CAGTGTAGCAAATAAAGTCATGATATTTTCCTGGC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
TCTGCTGTGCCTGTCTTGTACCTGGCACCATAGACCCTCCCACCTGCCCA

Features of the protein sequence

Length: 1180 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAR23423 0 100.0 putative N-ATPa...
Homo sapiens
Q9NQ11 0 99.5 Probable cation...
Homo sapiens
XP_001087655 0 97.1 similar to ATPa...
Macaca mulatta
AAH34575 0 99.5 ATP13A2 protein...
Homo sapiens
EAW94824 0 100.0 ATPase type 13A...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR001757 341 355 PR00119 ATPase
IPR001757 511 525 PR00119 ATPase
IPR001757 876 895 PR00119 ATPase
HMMPfam IPR008250 299 387 PF00122 E1-E2 ATPase-associated region
IPR005834 507 765 PF00702 Haloacid dehalogenase-like hydrolase
HMMTigr IPR006544 37 1123 TIGR01657 P-type ATPase of unknown pump specificity (type V)
IPR001757 262 532 TIGR01494 ATPase
IPR001757 850 966 TIGR01494 ATPase
ScanRegExp IPR001757 513 519 PS00154 ATPase
IPR000150 876 898 PS01229 Cof protein

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 249 ALWLADHYYWYALCIFLISSISI 271 PRIMARY 23
2 427 KFVAALSVLALLGTIYSIFILY 448 PRIMARY 22
3 460 RALDLVTVVVPPALPAAMTVCTL 482 SECONDARY 23
4 933 VFKYMALYSLTQFISVLILYTIN 955 PRIMARY 23
5 993 PGALLSVPVLSSLLLQMVLVTGV 1015 SECONDARY 23
6 1047 NTVVFSLSSFQYLILAAAVSKGA 1069 SECONDARY 23
7 1080 PFLVALALLSSVLVGLVLVPGLL 1102 PRIMARY 23
8 1119 LLLGLVTLNFVGAFMLESVLDQC 1141 SECONDARY 23
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