Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK01917
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | |
|---|---|
| Product ID | ORK01917 |
| Clone name | hk02187 |
| Vector information |
The cDNA fragment was inserted at the SalI-NotI site of
the ...
|
| Symbol | MYBPC1 |
| cDNA sequence | DNA sequence (3749 bp) Predicted protein sequence (1125 aa) |
|
HaloTag ORF Clone |
FHC01917
|
| Flexi ORF Clone | FXC01917 |
| Description | Myosin-binding protein C, slow-type (Slow MyBP-C) (C-protein, skeletal muscle slow isoform). |
Length: 3749 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: NO Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 304 bp |
|---|---|
| Genome contig ID | gi89161190f_100412898 |
| PolyA signal sequence (ATTAAA,-21) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (190879 - 190928) |
----+----*----+----*----+----*----+----*----+----* |
Length: 1125 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| FPrintScan | IPR003962 | 907 | 916 | PR00014 | Fibronectin |
| IPR003962 | 921 | 931 | PR00014 | Fibronectin | |
| IPR003962 | 944 | 962 | PR00014 | Fibronectin | |
| IPR003962 | 962 | 976 | PR00014 | Fibronectin | |
| HMMPfam | IPR013098 | 37 | 138 | PF07679 | Immunoglobulin I-set |
| IPR013098 | 231 | 316 | PF07679 | Immunoglobulin I-set | |
| IPR013098 | 321 | 409 | PF07679 | Immunoglobulin I-set | |
| IPR013098 | 412 | 497 | PF07679 | Immunoglobulin I-set | |
| IPR013098 | 512 | 595 | PF07679 | Immunoglobulin I-set | |
| IPR003961 | 599 | 685 | PF00041 | Fibronectin | |
| IPR003961 | 697 | 783 | PF00041 | Fibronectin | |
| IPR013098 | 800 | 889 | PF07679 | Immunoglobulin I-set | |
| IPR003961 | 893 | 975 | PF00041 | Fibronectin | |
| IPR013098 | 1008 | 1097 | PF07679 | Immunoglobulin I-set | |
| HMMSmart | IPR003599 | 43 | 139 | SM00409 | Immunoglobulin subtype |
| IPR003599 | 238 | 317 | SM00409 | Immunoglobulin subtype | |
| IPR003599 | 327 | 408 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 335 | 401 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 418 | 498 | SM00409 | Immunoglobulin subtype | |
| IPR003599 | 511 | 596 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 517 | 585 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003961 | 599 | 682 | SM00060 | Fibronectin | |
| IPR003961 | 697 | 780 | SM00060 | Fibronectin | |
| IPR003599 | 807 | 890 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 813 | 879 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003961 | 893 | 975 | SM00060 | Fibronectin | |
| IPR003599 | 1014 | 1098 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 1020 | 1087 | SM00408 | Immunoglobulin subtype 2 | |
| ProfileScan | IPR007110 | 319 | 406 | PS50835 | Immunoglobulin-like |
| IPR007110 | 501 | 594 | PS50835 | Immunoglobulin-like | |
| IPR003961 | 599 | 691 | PS50853 | Fibronectin | |
| IPR003961 | 696 | 789 | PS50853 | Fibronectin | |
| IPR007110 | 798 | 886 | PS50835 | Immunoglobulin-like | |
| IPR003961 | 893 | 984 | PS50853 | Fibronectin | |
| IPR007110 | 1008 | 1096 | PS50835 | Immunoglobulin-like |
