Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01919
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Accession No
Product ID ORK01919
Clone name pj01732
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol HDLBP
cDNA sequence DNA sequence (4200 bp)
Predicted protein sequence (1284 aa)
Flexi ORF Clone FXC01919
Description Vigilin (High density lipoprotein-binding protein) (HDL-binding protein).
Features of the cloned cDNA sequence

Length: 4200 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 157 bp
Genome contig ID gi89161199r_241717532
PolyA signal sequence
(None)		 
+----*----+----*----+----*----+----
AGGTCCCGCAGGGAGCCTAGCGCCTGGCTGTGTGT
Flanking genome sequence
(100000 - 99951)		 
----+----*----+----*----+----*----+----*----+----*
GCGGCCGCTCCTCCAGGCCTGGCCGTGCCCGCTCAGGACCTGCTCCACTG

Features of the protein sequence

Length: 1284 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q00341 0 100.0 Vigilin; High d...
 Homo sapiens
AAY14717 0 99.9 unknown [Homo s...
 Homo sapiens
BAG35256 0 99.9 unnamed protein...
 Homo sapiens
XP_001160227 0 99.8 high density li...
 Pan troglodytes
BAE00704 0 99.6 unnamed protein...
 Macaca fascicularis
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR004088 168 228 PF00013 K Homology
IPR004088 240 300 PF00013 K Homology
IPR004088 313 373 PF00013 K Homology
IPR004088 382 440 PF00013 K Homology
IPR004088 453 513 PF00013 K Homology
IPR004088 525 586 PF00013 K Homology
IPR004088 599 659 PF00013 K Homology
IPR004088 671 732 PF00013 K Homology
IPR004088 745 806 PF00013 K Homology
IPR004088 818 879 PF00013 K Homology
IPR004088 891 983 PF00013 K Homology
IPR004088 990 1050 PF00013 K Homology
IPR004088 1070 1133 PF00013 K Homology
IPR004088 1145 1206 PF00013 K Homology
HMMSmart IPR004087 165 233 SM00322 K Homology
IPR004087 237 305 SM00322 K Homology
IPR004087 310 378 SM00322 K Homology
IPR004087 379 445 SM00322 K Homology
IPR004087 450 518 SM00322 K Homology
IPR004087 522 591 SM00322 K Homology
IPR004087 596 664 SM00322 K Homology
IPR004087 668 737 SM00322 K Homology
IPR004087 742 811 SM00322 K Homology
IPR004087 815 884 SM00322 K Homology
IPR004087 888 988 SM00322 K Homology
IPR004087 989 1055 SM00322 K Homology
IPR004087 1067 1138 SM00322 K Homology
IPR004087 1142 1211 SM00322 K Homology
ProfileScan IPR004088 166 228 PS50084 K Homology
IPR004088 238 300 PS50084 K Homology
IPR004088 311 373 PS50084 K Homology
IPR004088 380 440 PS50084 K Homology
IPR004088 451 513 PS50084 K Homology
IPR004088 523 586 PS50084 K Homology
IPR004088 597 659 PS50084 K Homology
IPR004088 669 732 PS50084 K Homology
IPR004088 743 806 PS50084 K Homology
IPR004088 816 879 PS50084 K Homology
IPR004088 889 983 PS50084 K Homology
IPR004088 988 1050 PS50084 K Homology
IPR004088 1068 1133 PS50084 K Homology
IPR004088 1143 1206 PS50084 K Homology
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