Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK02134
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | |
|---|---|
| Product ID | ORK02134 |
| Clone name | pg00425 |
| Vector information |
The cDNA fragment was inserted at the SalI-NotI site of
the ...
|
| Symbol | SORL1 |
| cDNA sequence | DNA sequence (6761 bp) Predicted protein sequence (2212 aa) |
|
HaloTag ORF Clone |
FHC02134
|
| Flexi ORF Clone | FXC02134 |
| Description | Sortilin-related receptor precursor (Sorting protein-related receptor containing LDLR class A repeats) (SorLA) (SorLA-1) (Low-density lipoprotein receptor relative with 11 ligand-binding repeats) (LDLR relative with 11 ligand-binding repeats) (LR11). |
Length: 6761 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: YES Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 121 bp |
|---|---|
| Genome contig ID | gi51511727f_120728256 |
| PolyA signal sequence (None) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (277349 - 277398) |
----+----*----+----*----+----*----+----*----+----* |
Length: 2212 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| FPrintScan | IPR002172 | 1166 | 1187 | PR00261 | Low density lipoprotein-receptor |
| IPR002172 | 1207 | 1228 | PR00261 | Low density lipoprotein-receptor | |
| IPR002172 | 1245 | 1266 | PR00261 | Low density lipoprotein-receptor | |
| IPR002172 | 1285 | 1306 | PR00261 | Low density lipoprotein-receptor | |
| IPR002172 | 1333 | 1354 | PR00261 | Low density lipoprotein-receptor | |
| IPR002172 | 1377 | 1398 | PR00261 | Low density lipoprotein-receptor | |
| HMMPfam | IPR002860 | 134 | 145 | PF02012 | Glycoside hydrolase |
| IPR002860 | 230 | 241 | PF02012 | Glycoside hydrolase | |
| IPR002860 | 439 | 450 | PF02012 | Glycoside hydrolase | |
| IPR002860 | 519 | 530 | PF02012 | Glycoside hydrolase | |
| IPR002860 | 560 | 571 | PF02012 | Glycoside hydrolase | |
| IPR000033 | 798 | 840 | PF00058 | Low-density lipoprotein receptor | |
| IPR000033 | 842 | 884 | PF00058 | Low-density lipoprotein receptor | |
| IPR000033 | 886 | 929 | PF00058 | Low-density lipoprotein receptor | |
| IPR000033 | 931 | 969 | PF00058 | Low-density lipoprotein receptor | |
| IPR002172 | 1074 | 1110 | PF00057 | Low density lipoprotein-receptor | |
| IPR002172 | 1113 | 1151 | PF00057 | Low density lipoprotein-receptor | |
| IPR002172 | 1154 | 1190 | PF00057 | Low density lipoprotein-receptor | |
| IPR002172 | 1195 | 1233 | PF00057 | Low density lipoprotein-receptor | |
| IPR002172 | 1235 | 1269 | PF00057 | Low density lipoprotein-receptor | |
| IPR002172 | 1321 | 1357 | PF00057 | Low density lipoprotein-receptor | |
| IPR002172 | 1364 | 1401 | PF00057 | Low density lipoprotein-receptor | |
| IPR002172 | 1415 | 1451 | PF00057 | Low density lipoprotein-receptor | |
| IPR002172 | 1467 | 1504 | PF00057 | Low density lipoprotein-receptor | |
| IPR002172 | 1510 | 1547 | PF00057 | Low density lipoprotein-receptor | |
| IPR003961 | 1553 | 1626 | PF00041 | Fibronectin | |
| IPR003961 | 1649 | 1733 | PF00041 | Fibronectin | |
| IPR003961 | 1929 | 2010 | PF00041 | Fibronectin | |
| HMMSmart | IPR006581 | 122 | 755 | SM00602 | VPS10 |
| IPR000033 | 778 | 820 | SM00135 | Low-density lipoprotein receptor | |
| IPR000033 | 822 | 864 | SM00135 | Low-density lipoprotein receptor | |
| IPR000033 | 865 | 910 | SM00135 | Low-density lipoprotein receptor | |
| IPR000033 | 911 | 951 | SM00135 | Low-density lipoprotein receptor | |
| IPR000033 | 952 | 992 | SM00135 | Low-density lipoprotein receptor | |
| IPR002172 | 1075 | 1112 | SM00192 | Low density lipoprotein-receptor | |
| IPR002172 | 1114 | 1153 | SM00192 | Low density lipoprotein-receptor | |
| IPR002172 | 1155 | 1192 | SM00192 | Low density lipoprotein-receptor | |
| IPR002172 | 1196 | 1235 | SM00192 | Low density lipoprotein-receptor | |
| IPR002172 | 1236 | 1271 | SM00192 | Low density lipoprotein-receptor | |
| IPR002172 | 1272 | 1315 | SM00192 | Low density lipoprotein-receptor | |
| IPR002172 | 1322 | 1359 | SM00192 | Low density lipoprotein-receptor | |
| IPR002172 | 1365 | 1403 | SM00192 | Low density lipoprotein-receptor | |
| IPR002172 | 1416 | 1453 | SM00192 | Low density lipoprotein-receptor | |
| IPR002172 | 1468 | 1506 | SM00192 | Low density lipoprotein-receptor | |
| IPR002172 | 1511 | 1549 | SM00192 | Low density lipoprotein-receptor | |
| IPR003961 | 1553 | 1636 | SM00060 | Fibronectin | |
| IPR003961 | 1649 | 1730 | SM00060 | Fibronectin | |
| IPR003961 | 1745 | 1827 | SM00060 | Fibronectin | |
| IPR003961 | 1841 | 1917 | SM00060 | Fibronectin | |
| IPR003961 | 1930 | 2013 | SM00060 | Fibronectin | |
| IPR003961 | 2022 | 2104 | SM00060 | Fibronectin | |
| ProfileScan | IPR000033 | 798 | 841 | PS51120 | Low-density lipoprotein receptor |
| IPR000033 | 842 | 885 | PS51120 | Low-density lipoprotein receptor | |
| IPR000033 | 886 | 927 | PS51120 | Low-density lipoprotein receptor | |
| IPR000033 | 929 | 970 | PS51120 | Low-density lipoprotein receptor | |
| IPR000033 | 971 | 1011 | PS51120 | Low-density lipoprotein receptor | |
| IPR002172 | 1075 | 1111 | PS50068 | Low density lipoprotein-receptor | |
| IPR002172 | 1114 | 1152 | PS50068 | Low density lipoprotein-receptor | |
| IPR002172 | 1155 | 1191 | PS50068 | Low density lipoprotein-receptor | |
| IPR002172 | 1196 | 1234 | PS50068 | Low density lipoprotein-receptor | |
| IPR002172 | 1232 | 1270 | PS50068 | Low density lipoprotein-receptor | |
| IPR002172 | 1272 | 1314 | PS50068 | Low density lipoprotein-receptor | |
| IPR002172 | 1322 | 1358 | PS50068 | Low density lipoprotein-receptor | |
| IPR002172 | 1365 | 1402 | PS50068 | Low density lipoprotein-receptor | |
| IPR002172 | 1416 | 1452 | PS50068 | Low density lipoprotein-receptor | |
| IPR002172 | 1468 | 1505 | PS50068 | Low density lipoprotein-receptor | |
| IPR002172 | 1511 | 1548 | PS50068 | Low density lipoprotein-receptor | |
| IPR003961 | 1552 | 1644 | PS50853 | Fibronectin | |
| IPR003961 | 1649 | 1740 | PS50853 | Fibronectin | |
| IPR003961 | 1747 | 1836 | PS50853 | Fibronectin | |
| IPR003961 | 1841 | 1925 | PS50853 | Fibronectin | |
| IPR003961 | 1932 | 2021 | PS50853 | Fibronectin | |
| IPR003961 | 2022 | 2116 | PS50853 | Fibronectin | |
| ScanRegExp | IPR013032 | 1056 | 1069 | PS01186 | EGF-like region |
| IPR002172 | 1088 | 1110 | PS01209 | Low density lipoprotein-receptor | |
| IPR002172 | 1129 | 1151 | PS01209 | Low density lipoprotein-receptor | |
| IPR002172 | 1168 | 1190 | PS01209 | Low density lipoprotein-receptor | |
| IPR000923 | 1199 | 1212 | PS00196 | Blue (type 1) copper domain | |
| IPR002172 | 1209 | 1233 | PS01209 | Low density lipoprotein-receptor | |
| IPR002172 | 1247 | 1269 | PS01209 | Low density lipoprotein-receptor | |
| IPR002172 | 1287 | 1313 | PS01209 | Low density lipoprotein-receptor | |
| IPR002172 | 1335 | 1357 | PS01209 | Low density lipoprotein-receptor | |
| IPR002172 | 1379 | 1401 | PS01209 | Low density lipoprotein-receptor | |
| IPR002172 | 1429 | 1451 | PS01209 | Low density lipoprotein-receptor | |
| IPR002172 | 1525 | 1547 | PS01209 | Low density lipoprotein-receptor |
Prediction of transmembrane (TM) segments| Method | No. | N terminal | transmembrane region | C terminal | type | length | SOSUI2 | 1 | 9 | RLPFLFTLVALLPPGALCEVWTQ | 31 | SECONDARY | 23 | 2 | 2134 | VAAVVVPILFLILLSLGVGFAIL | 2156 | PRIMARY | 23 |
|---|
