Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK02150
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | |
|---|---|
| Product ID | ORK02150 |
| Clone name | fk13968 |
| Vector information |
The cDNA fragment was inserted at the SalI-NotI site of
the ...
|
| Symbol | SF3B2 |
| cDNA sequence | DNA sequence (3580 bp) Predicted protein sequence (954 aa) |
|
HaloTag ORF Clone |
FHC02150
|
| Flexi ORF Clone | FXC02150 |
| Description | Splicing factor 3B subunit 2 (Spliceosome-associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA-splicing factor SF3b 145 kDa subunit). |
Length: 3580 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: NO Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 144 bp |
|---|---|
| Genome contig ID | gi51511727f_65475684 |
| PolyA signal sequence (AATAAA,-20) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (117254 - 117303) |
----+----*----+----*----+----*----+----*----+----* |
Length: 954 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| HMMPfam | IPR003034 | 83 | 117 | PF02037 | DNA-binding SAP |
| IPR007180 | 528 | 656 | PF04037 | Protein of unknown function DUF382 | |
| IPR006568 | 664 | 716 | PF04046 | PSP | |
| HMMSmart | IPR003034 | 83 | 117 | SM00513 | DNA-binding SAP |
| IPR006568 | 660 | 718 | SM00581 | PSP | |
| ProfileScan | IPR003034 | 83 | 117 | PS50800 | DNA-binding SAP |
