ORK04011

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK04011

Order Kazusa clone(s) from :

Accession No	AB209454
Product ID	ORK04011
Clone name	ah02859
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	ABCC5
cDNA sequence	DNA sequence (5785 bp) Predicted protein sequence (1430 aa)
Description	Multidrug resistance-associated protein 5 (ATP-binding cassette sub- family C member 5) (Multi-specific organic anion transporter-C) (MOAT- C) (pABC11) (SMRP).

Features of the cloned cDNA sequence

Description

Length: 5785 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	1358 bp
Genome contig ID	gi89161205r_185020420
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- TCTGAAAATGTGAATAAAATTATTTTGGATTTTGT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAACTCTTCGTGTATCAAACAATTCTCTGGGAAGGGAGTGAGATATCCC

Features of the protein sequence

Description

Length: 1430 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAD92691	100.0	Multidrug resis...	Homo sapiens
O15440	99.9	Multidrug resis...	Homo sapiens
AAD37716	99.8	ABC protein [Ho...	Homo sapiens
AAD04169	99.8	ABC transporter...	Homo sapiens
BAA76608	99.7	MRP5 [Homo sapi...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR003439	677	718	PD000006	ABC transporter related
BlastProDom	IPR003439	1322	1365	PD000006	ABC transporter related
HMMPfam	IPR001140	172	440	PF00664	ABC transporter
	IPR003439	581	752	PF00005	ABC transporter related
	IPR001140	853	1140	PF00664	ABC transporter
	IPR003439	1213	1396	PF00005	ABC transporter related
HMMSmart	IPR003593	580	753	SM00382	AAA+ ATPase
HMMSmart	IPR003593	1212	1397	SM00382	AAA+ ATPase
ProfileScan	IPR011527	173	452	PS50929	ABC transporter
	IPR003439	555	776	PS50893	ABC transporter related
	IPR011527	853	1148	PS50929	ABC transporter
	IPR003439	1186	1420	PS50893	ABC transporter related
ScanRegExp	IPR003439	678	692	PS00211	ABC transporter related
ScanRegExp	IPR003439	1323	1337	PS00211	ABC transporter related

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	171	RLILSIVCLMITQLAGFSGPAFM	193	SECONDARY	23
	2	211	SLLLVLGLLLTEIVRSWSLALTW	233	SECONDARY	23
	3	279	RMFEAAAVGSLLAGGPVVAILGM	301	PRIMARY	23
	4	306	IILGPTGFLGSAVFILFYPAMMF	328	PRIMARY	23
	5	389	GYFQSITVGVAPIVVVIASVVTF	411	PRIMARY	23
	6	422	TAAQAFTVVTVFNSMTFALKVTP	444	SECONDARY	23
	7	841	VYIQAAGGPLAFLVIMALFMLNV	863	PRIMARY	23
	8	910	IYALSMAVMLILKAIRGVVFVKG	932	PRIMARY	23
	9	986	FIQNVILVFFCVGMIAGVFPWFL	1008	PRIMARY	23
	10	1011	VGPLVILFSVLHIVSRVLIREL	1032	PRIMARY	22
	11	1085	TCAMRWLAVRLDLISIALITTTG	1107	PRIMARY	23
	12	1117	IPPAYAGLAISYAVQLTGLFQFT	1139	SECONDARY	23