Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK05007
Order Kazusa clone(s) from : Japan || Other countries
Accession No AB209725
Product ID ORK05007
Clone name bm02405
Vector information
The cDNA fragment was inserted at the XhoI-SacI site of the ...
Symbol FBXW7
cDNA sequence DNA sequence (1944 bp)
Predicted protein sequence (624 aa)
Flexi ORF Clone FXC05007
Description F-box/WD repeat protein 7 (F-box and WD-40 domain protein 7) (F-box protein FBX30) (hCdc4) (Archipelago homolog) (hAgo) (SEL-10).
Features of the cloned cDNA sequence

Length: 1944 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 68 bp
Genome contig ID gi89161207r_153363415
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
GACGATATACTCCCTGCCCTTCCCCCTGCAAAAAG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAGAAAAGAAAAAGAAAAAAATCCCTTGTTCTCAGTGGTGCAGGA

Features of the protein sequence

Length: 624 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD92962 0 100.0 F-box protein F...
Homo sapiens
AAL06291 0 100.0 archipelago bet...
Homo sapiens
XP_853624 0 99.8 similar to F-bo...
Canis lupus fam...
BAD97169 0 99.6 F-box protein F...
Homo sapiens
AAI19947 0 99.6 F-box and WD re...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR001680 292 323 PD000018 WD40 repeat
IPR001680 333 364 PD000018 WD40 repeat
IPR001680 373 405 PD000018 WD40 repeat
IPR001680 414 444 PD000018 WD40 repeat
IPR001680 453 485 PD000018 WD40 repeat
IPR001680 533 568 PD000018 WD40 repeat
FPrintScan IPR001680 391 405 PR00320 WD40 repeat
IPR001680 511 525 PR00320 WD40 repeat
IPR001680 554 568 PR00320 WD40 repeat
HMMPfam IPR001810 196 243 PF00646 Cyclin-like F-box
IPR001680 288 324 PF00400 WD40 repeat
IPR001680 328 364 PF00400 WD40 repeat
IPR001680 368 404 PF00400 WD40 repeat
IPR001680 408 444 PF00400 WD40 repeat
IPR001680 448 484 PF00400 WD40 repeat
IPR001680 488 524 PF00400 WD40 repeat
IPR001680 531 567 PF00400 WD40 repeat
HMMSmart IPR001810 201 241 SM00256 Cyclin-like F-box
IPR001680 286 324 SM00320 WD40 repeat
IPR001680 327 364 SM00320 WD40 repeat
IPR001680 367 404 SM00320 WD40 repeat
IPR001680 407 444 SM00320 WD40 repeat
IPR001680 447 484 SM00320 WD40 repeat
IPR001680 487 524 SM00320 WD40 repeat
IPR001680 527 567 SM00320 WD40 repeat
IPR001680 570 618 SM00320 WD40 repeat
ProfileScan IPR001810 195 241 PS50181 Cyclin-like F-box
IPR001680 293 576 PS50294 WD40 repeat
IPR001680 308 333 PS50082 WD40 repeat
IPR001680 334 373 PS50082 WD40 repeat
IPR001680 374 413 PS50082 WD40 repeat
IPR001680 414 453 PS50082 WD40 repeat
IPR001680 454 493 PS50082 WD40 repeat
IPR001680 494 533 PS50082 WD40 repeat
IPR001680 537 576 PS50082 WD40 repeat
ScanRegExp IPR001680 351 365 PS00678 WD40 repeat
IPR001680 391 405 PS00678 WD40 repeat
IPR001680 471 485 PS00678 WD40 repeat
IPR001680 511 525 PS00678 WD40 repeat
IPR001680 554 568 PS00678 WD40 repeat

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 8 SCICLYCGVLLPVLLPNLPFLTC 30 PRIMARY 23
Order Kazusa clone(s) from : Japan || Other countries
Send a message to office AT kazusa.or.jp