Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK05320
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Accession No AK226129
Product ID ORK05320
Clone name fk00939
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol ERCC8
cDNA sequence DNA sequence (3556 bp)
Predicted protein sequence (303 aa)
Description Guanine nucleotide-binding protein-like 3-like protein.
Features of the cloned cDNA sequence

Length: 3556 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : YES
Integrity of 3' end
Length of 3'UTR 2428 bp
Genome contig ID gi51511721r_60105418
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Features of the protein sequence

Length: 303 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAG51829 9.3e-52 96.1 unnamed protein...
Homo sapiens
BAG65395 1e-51 96.1 unnamed protein...
Homo sapiens
Q13216 1e-51 96.1 DNA excision re...
Homo sapiens
AAX36967 1e-51 96.1 Cockayne syndro...
synthetic construct
AAV38845 1e-51 96.1 Cockayne syndro...
synthetic construct
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR001680 59 93 PD000018 WD40 repeat
FPrintScan IPR001680 79 93 PR00320 WD40 repeat
IPR001680 137 151 PR00320 WD40 repeat
HMMPfam IPR001680 53 92 PF00400 WD40 repeat
IPR001680 112 150 PF00400 WD40 repeat
HMMSmart IPR001680 52 92 SM00320 WD40 repeat
IPR001680 111 150 SM00320 WD40 repeat
ProfileScan IPR001680 59 94 PS50082 WD40 repeat
IPR001680 59 159 PS50294 WD40 repeat
IPR001680 118 159 PS50082 WD40 repeat
ScanRegExp IPR001680 79 93 PS00678 WD40 repeat
IPR001680 137 151 PS00678 WD40 repeat
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