Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK05430
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Accession No AB209117
Product ID ORK05430
Clone name hh13418
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol HLA-A
cDNA sequence DNA sequence (5420 bp)
Predicted protein sequence (393 aa)
Description HLA class I histocompatibility antigen, A-1 alpha chain precursor (MHC class I antigen A*1).
Features of the cloned cDNA sequence

Length: 5420 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: YES
Warning for coding interruption : YES
Integrity of 3' end
Length of 3'UTR 4237 bp
Genome contig ID gi89161210f_29918312
PolyA signal sequence
Flanking genome sequence
(107052 - 107101)

Features of the protein sequence

Length: 393 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD92354 1.6e-167 100.0 HLA class I his...
Homo sapiens
P30443 2.8e-152 100.0 HLA class I his...
Homo sapiens
CAC44381 7.8e-152 99.7 MHC class I ant...
Homo sapiens
CAH25490 9.1e-152 99.7 MHC class I ant...
Homo sapiens
AAA80569 4.7e-151 99.4 HLA-A-0102 alle...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR001039 77 112 PD000050 MHC class I
FPrintScan IPR001039 82 111 PR01638 MHC class I
IPR001039 114 130 PR01638 MHC class I
IPR001039 135 152 PR01638 MHC class I
IPR001039 180 198 PR01638 MHC class I
HMMPfam IPR001039 24 202 PF00129 MHC class I
IPR003597 207 294 PF07654 Immunoglobulin C1-set
IPR010579 335 363 PF06623 MHC class I
HMMSmart IPR003597 221 292 SM00407 Immunoglobulin C1-set
ProfileScan IPR007110 208 294 PS50835 Immunoglobulin-like
ScanRegExp IPR003006 280 286 PS00290 Immunoglobulin/major histocompatibility complex motif

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
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