Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK05473
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Accession No AB209506
Product ID ORK05473
Clone name ff09358
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol HTT
cDNA sequence DNA sequence (11155 bp)
Predicted protein sequence (1147 aa)
Description Huntingtin (Huntington disease protein) (HD protein).
Features of the cloned cDNA sequence

Length: 11155 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : YES
Integrity of 3' end
Length of 3'UTR 5806 bp
Genome contig ID gi89161207f_2999864
PolyA signal sequence
(AGTAAA,-23)
+----*----+----*----+----*----+----
TTTAATTATATCAGTAAAGAGATTAATTTTAACGT
Flanking genome sequence
(212320 - 212369)
----+----*----+----*----+----*----+----*----+----*
AACTCTTTCTATGCCCGTGTAAAGTATGTGAATCGCAAGGCCTGTGCTGC

Features of the protein sequence

Length: 1147 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD92743 0 100.0 huntingtin vari...
Homo sapiens
EAW82474 0 99.6 huntingtin (Hun...
Homo sapiens
EAW82475 0 99.6 huntingtin (Hun...
Homo sapiens
EAW82478 0 99.6 huntingtin (Hun...
Homo sapiens
P42858 0 99.6 Huntingtin; Hun...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000357 299 336 PF02985 HEAT

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 420 TFGCCEALCLLSTAFPVCIWSLG 442 PRIMARY 23
2 459 SCTVGMATMILTLLSSAWFPL 479 SECONDARY 21
3 534 PMVEQLFSHLLKVINICAHVLDD 556 SECONDARY 23
4 884 QFRESEAIIPNIFFFLVLLS 903 PRIMARY 20
5 1064 VSTVQLWISGILAILRVLISQST 1086 PRIMARY 23
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