ORK05803

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK05803

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Accession No	AB209319
Product ID	ORK05803
Clone name	fh08237
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	LAMP1
cDNA sequence	DNA sequence (5245 bp) Predicted protein sequence (392 aa)
Description	Lysosome-associated membrane glycoprotein 1 precursor (LAMP-1) (CD107a antigen).

Features of the cloned cDNA sequence

Description

Length: 5245 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : YES

Integrity of 3' end

Length of 3'UTR	2539 bp
Genome contig ID	gi51511729f_112907248
PolyA signal sequence (AATAAA,-25)	+--------+--------+----*----+---- GTAACAATGTAATAAAAAGCCTCTTTCTTTTTGGG
Flanking genome sequence (118500 - 118549)	----+--------+--------+--------+--------+----* GTGGGCCTTGTCCTTCTGTCAGCTAAAATGGGAGCTCATGAGAGAAGGAC

Features of the protein sequence

Description

Length: 392 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92556	5e-138	100.0	LAMP1 protein v...	Homo sapiens
AAH21288	2.2e-90	99.2	Lysosomal-assoc...	Homo sapiens
BAG52545	2.4e-89	100.0	unnamed protein...	Homo sapiens
P11279	1.8e-87	99.6	Lysosome-associ...	Homo sapiens
XP_001087681	6.3e-87	96.0	lysosomal-assoc...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002000	33	367	PF01299	Lysosome-associated membrane glycoprotein (Lamp)/CD68
ScanRegExp	IPR002000	29	43	PS00310	Lysosome-associated membrane glycoprotein (Lamp)/CD68
ScanRegExp	IPR002000	219	233	PS00310	Lysosome-associated membrane glycoprotein (Lamp)/CD68

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	290	GGAHCVSTTSFCALGLLMGGSV	311	SECONDARY	22
	2	318	LFFCLPFILGFLVPWFPSPLSIP	340	PRIMARY	23
	3	371	GFRCCCPVVPWWHFCLGGLLCS	392	PRIMARY	22