ORK06431

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK06431

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Accession No	AB209430
Product ID	ORK06431
Clone name	ph01164
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	POMT1
cDNA sequence	DNA sequence (4768 bp) Predicted protein sequence (446 aa)
Description	Protein O-mannosyl-transferase 1 (EC 2.4.1.109) (Dolichyl-phosphate- mannose--protein mannosyltransferase 1).

Features of the cloned cDNA sequence

Description

Length: 4768 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : YES

Features of the protein sequence

Description

Length: 446 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92667	1.8e-198	100.0	protein O-manno...	Homo sapiens
EAW87975	8.1e-177	100.0	protein-O-manno...	Homo sapiens
BAG58462	1e-176	100.0	unnamed protein...	Homo sapiens
CAI40223	1.1e-176	100.0	protein-O-manno...	Homo sapiens
EAW87976	1.1e-176	100.0	protein-O-manno...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003608	44	218	PF02815	MIR
HMMSmart	IPR003608	27	80	SM00472	MIR
	IPR003608	91	148	SM00472	MIR
	IPR003608	155	212	SM00472	MIR
ProfileScan	IPR003608	22	80	PS50919	MIR
	IPR003608	91	148	PS50919	MIR
	IPR003608	152	212	PS50919	MIR

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	292	LLGNIVIWVSGSLALAIYALLSL	314	PRIMARY	23
	2	333	LRWVLAGALCAGGWAVNYLPFFL	355	SECONDARY	23
	3	363	YHYLPALTFQILLLPVVLQHISD	385	PRIMARY	23