Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK06537
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Accession No AB209333
Product ID ORK06537
Clone name fh11410
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol PTPRS
cDNA sequence DNA sequence (5443 bp)
Predicted protein sequence (1560 aa)
Description Receptor-type tyrosine-protein phosphatase S precursor (EC 3.1.3.48) (R-PTP-S) (Protein-tyrosine phosphatase sigma) (R-PTP-sigma).
Features of the cloned cDNA sequence

Length: 5443 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Features of the protein sequence

Length: 1560 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD92570 0 100.0 protein tyrosin...
 Homo sapiens
XP_001111889 0 75.1 protein tyrosin...
 Macaca mulatta
AAI06714 0 74.9 PTPRD protein [...
 Homo sapiens
XP_001173780 0 71.0 similar to Prot...
 Pan troglodytes
NP_570923 0 98.7 receptor-type t...
 Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR000242 1040 1047 PR00700 Protein-tyrosine phosphatase
IPR000242 1056 1076 PR00700 Protein-tyrosine phosphatase
IPR000242 1140 1157 PR00700 Protein-tyrosine phosphatase
IPR000242 1179 1197 PR00700 Protein-tyrosine phosphatase
IPR000242 1210 1225 PR00700 Protein-tyrosine phosphatase
IPR000242 1226 1236 PR00700 Protein-tyrosine phosphatase
HMMPfam IPR013098 59 150 PF07679 Immunoglobulin I-set
IPR013098 161 251 PF07679 Immunoglobulin I-set
IPR013151 272 326 PF00047 Immunoglobulin
IPR003961 345 427 PF00041 Fibronectin
IPR003961 439 526 PF00041 Fibronectin
IPR003961 538 619 PF00041 Fibronectin
IPR003961 629 700 PF00041 Fibronectin
IPR000242 1011 1242 PF00102 Protein-tyrosine phosphatase
IPR000242 1300 1521 PF00102 Protein-tyrosine phosphatase
HMMSmart IPR003599 65 151 SM00409 Immunoglobulin subtype
IPR003598 71 140 SM00408 Immunoglobulin subtype 2
IPR003599 167 252 SM00409 Immunoglobulin subtype
IPR003598 173 240 SM00408 Immunoglobulin subtype 2
IPR003599 264 342 SM00409 Immunoglobulin subtype
IPR003598 270 331 SM00408 Immunoglobulin subtype 2
IPR003961 345 424 SM00060 Fibronectin
IPR003961 440 523 SM00060 Fibronectin
IPR003961 538 616 SM00060 Fibronectin
IPR003961 629 705 SM00060 Fibronectin
IPR000242 987 1245 SM00194 Protein-tyrosine phosphatase
IPR003595 1141 1242 SM00404 Protein-tyrosine phosphatase
IPR000242 1274 1536 SM00194 Protein-tyrosine phosphatase
IPR003595 1430 1533 SM00404 Protein-tyrosine phosphatase
ProfileScan IPR007110 59 149 PS50835 Immunoglobulin-like
IPR007110 161 250 PS50835 Immunoglobulin-like
IPR007110 258 340 PS50835 Immunoglobulin-like
IPR003961 345 433 PS50853 Fibronectin
IPR003961 439 533 PS50853 Fibronectin
IPR003961 538 627 PS50853 Fibronectin
IPR003961 628 712 PS50853 Fibronectin
IPR000242 988 1243 PS50055 Protein-tyrosine phosphatase
IPR000387 1163 1234 PS50056 Protein-tyrosine phosphatase
IPR000242 1275 1534 PS50055 Protein-tyrosine phosphatase
IPR000387 1452 1525 PS50056 Protein-tyrosine phosphatase
ScanRegExp IPR000387 1182 1194 PS00383 Protein-tyrosine phosphatase
IPR000387 1473 1485 PS00383 Protein-tyrosine phosphatase

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 34 GMVSVVGPMGLLVVLLVGGCAAE 56 PRIMARY 23
2 877 GLIWVIGPVLAVVFIICIVIAIL 899 PRIMARY 23
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