ORK06714

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK06714

Order Kazusa clone(s) from :

Accession No	AB208943
Product ID	ORK06714
Clone name	fk13921
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	RXFP1
cDNA sequence	DNA sequence (3671 bp) Predicted protein sequence (627 aa)
Description	Relaxin receptor 1 (Relaxin family peptide receptor 1) (Leucine-rich repeat-containing G-protein coupled receptor 7).

Features of the cloned cDNA sequence

Description

Length: 3671 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	1312 bp
Genome contig ID	gi89161207f_159562578
PolyA signal sequence (AATAAA,-26)	+--------+--------+----*----+---- TGTTCTGAAAATAAATTATCTGAAATTTAACTATT
Flanking genome sequence (231393 - 231442)	----+--------+--------+--------+--------+----* AAAAATGGATTGCTTCGGGGTTTTTTCTCTGCTTACTTGGAATAATCTCA

Features of the protein sequence

Description

Length: 627 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAD92180	100.0	leucine-rich re...	Homo sapiens
XP_001143890	99.5	leucine-rich re...	Pan troglodytes
AAX85198	99.0	LGR7.10 [Homo s...	Homo sapiens
Q9HBX9	99.0	Relaxin recepto...	Homo sapiens
AAG17167	99.0	leucine-rich re...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR008112	49	64	PR01739	Relaxin receptor
	IPR001611	167	180	PR00019	Leucine-rich repeat
	IPR001611	188	201	PR00019	Leucine-rich repeat
	IPR008112	238	250	PR01739	Relaxin receptor
	IPR008112	254	268	PR01739	Relaxin receptor
	IPR000276	310	331	PR00237	Rhodopsin-like GPCR superfamily
	IPR008112	332	342	PR01739	Relaxin receptor
	IPR000276	362	384	PR00237	Rhodopsin-like GPCR superfamily
	IPR000276	397	418	PR00237	Rhodopsin-like GPCR superfamily
	IPR008112	423	436	PR01739	Relaxin receptor
	IPR000276	496	520	PR00237	Rhodopsin-like GPCR superfamily
	IPR008112	520	534	PR01739	Relaxin receptor
	IPR000276	533	559	PR00237	Rhodopsin-like GPCR superfamily
HMMPfam	IPR001611	45	67	PF00560	Leucine-rich repeat
	IPR001611	69	91	PF00560	Leucine-rich repeat
	IPR001611	118	140	PF00560	Leucine-rich repeat
	IPR001611	142	164	PF00560	Leucine-rich repeat
	IPR001611	166	188	PF00560	Leucine-rich repeat
	IPR001611	190	212	PF00560	Leucine-rich repeat
	IPR000276	292	551	PF00001	Rhodopsin-like GPCR superfamily
HMMSmart	IPR003591	14	42	SM00369	Leucine-rich repeat
	NULL	43	69	SM00365	NULL
	IPR003591	43	66	SM00369	Leucine-rich repeat
	IPR003591	67	90	SM00369	Leucine-rich repeat
	NULL	116	137	SM00365	NULL
	IPR003591	116	139	SM00369	Leucine-rich repeat
	IPR003591	140	163	SM00369	Leucine-rich repeat
	NULL	164	182	SM00365	NULL
	IPR003591	164	187	SM00369	Leucine-rich repeat
	IPR003591	188	211	SM00369	Leucine-rich repeat
	IPR003591	212	235	SM00369	Leucine-rich repeat
ProfileScan	IPR000276	292	551	PS50262	Rhodopsin-like GPCR superfamily

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	274	VSIIQRVFVWVVSAVTCFGNIFV	296	PRIMARY	23
	2	312	MSIISLCCADCLMGIYLFVIGGF	334	PRIMARY	23
	3	363	ILSTEVSVLLLTFLTLEKYICIV	385	PRIMARY	23
	4	398	TITVLILIWITGFIVAFIPLSNK	420	PRIMARY	23
	5	446	AQIYSVAIFLGINLAAFIIIVFS	468	PRIMARY	23
	6	500	FFFIVFTDALCWIPIFVVKFLSL	522	PRIMARY	23
	7	533	SWVVIFILPINSALNPILYTLTT	555	SECONDARY	23