ORK07352

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK07352

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Accession No	AB209073
Product ID	ORK07352
Clone name	hk01701
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	DCAF11
cDNA sequence	DNA sequence (4210 bp) Predicted protein sequence (469 aa)
Description	WD repeat protein 23.

Features of the cloned cDNA sequence

Description

Length: 4210 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : YES

Features of the protein sequence

Description

Length: 469 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92310	3.7e-214	100.0	WD repeat domai...	Homo sapiens
CAD62308	1.1e-201	99.7	unnamed protein...	Homo sapiens
XP_001110481	1.1e-199	98.8	similar to WD r...	Macaca mulatta
XP_859976	1.9e-195	95.6	similar to WD r...	Canis lupus fam...
XP_859938	2e-195	95.6	similar to WD r...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR001680	274	307	PD000018	WD40 repeat
FPrintScan	IPR001680	246	260	PR00320	WD40 repeat
	IPR001680	293	307	PR00320	WD40 repeat
	IPR001680	421	435	PR00320	WD40 repeat
HMMPfam	IPR001680	103	123	PF00400	WD40 repeat
	IPR001680	220	259	PF00400	WD40 repeat
	IPR001680	268	306	PF00400	WD40 repeat
	IPR001680	396	434	PF00400	WD40 repeat
HMMSmart	IPR001680	85	123	SM00320	WD40 repeat
	IPR001680	128	169	SM00320	WD40 repeat
	IPR001680	175	216	SM00320	WD40 repeat
	IPR001680	219	259	SM00320	WD40 repeat
	IPR001680	267	306	SM00320	WD40 repeat
	IPR001680	347	392	SM00320	WD40 repeat
	IPR001680	395	434	SM00320	WD40 repeat
ProfileScan	IPR001680	91	443	PS50294	WD40 repeat
	IPR001680	226	259	PS50082	WD40 repeat
	IPR001680	274	308	PS50082	WD40 repeat
	IPR001680	402	443	PS50082	WD40 repeat

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