ORK07397

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK07397

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Accession No	AB208916
Product ID	ORK07397
Clone name	hk04643
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	ZBTB16
cDNA sequence	DNA sequence (4427 bp) Predicted protein sequence (509 aa)
Description	Zinc finger and BTB domain-containing protein 16 (Zinc finger protein PLZF) (Promyelocytic leukemia zinc finger protein) (Zinc finger protein 145).

Features of the cloned cDNA sequence

Description

Length: 4427 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Features of the protein sequence

Description

Length: 509 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92153	2.7e-173	100.0	zinc finger and...	Homo sapiens
Q05516	5.8e-164	99.7	Zinc finger and...	Homo sapiens
CAA79489	5.8e-164	99.7	kruppel-like zi...	Homo sapiens
XP_001086244	4.8e-163	99.1	similar to prom...	Macaca mulatta
XP_001502171	2.3e-160	97.3	zinc finger and...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR013069	29	131	PF00651	BTB/POZ
	IPR007087	437	459	PF00096	Zinc finger
	IPR007087	466	488	PF00096	Zinc finger
HMMSmart	IPR000210	39	131	SM00225	BTB/POZ-like
	IPR015880	409	431	SM00355	Zinc finger
	IPR015880	437	459	SM00355	Zinc finger
	IPR015880	466	488	SM00355	Zinc finger
ProfileScan	IPR000210	39	101	PS50097	BTB/POZ-like
	IPR007087	409	436	PS50157	Zinc finger
	IPR007087	437	464	PS50157	Zinc finger
	IPR007087	466	493	PS50157	Zinc finger
ScanRegExp	IPR007087	411	431	PS00028	Zinc finger
	IPR007087	439	459	PS00028	Zinc finger
	IPR007087	468	488	PS00028	Zinc finger

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