Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK07467
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | AB209520 |
|---|---|
| Product ID | ORK07467 |
| Clone name | fk09522 |
| Vector information |
The cDNA fragment was inserted at the SalI-NotI site of
the ...
|
| Symbol | ZNF41 |
| cDNA sequence | DNA sequence (3544 bp) Predicted protein sequence (698 aa) |
| Description | Zinc finger protein 41. |
Length: 3544 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: NO Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 728 bp |
|---|---|
| Genome contig ID | gi89161218r_47091045 |
| PolyA signal sequence (AATATA,-27) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (100000 - 99951) |
----+----*----+----*----+----*----+----*----+----* |
Length: 698 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| BlastProDom | IPR007087 | 246 | 269 | PD000003 | Zinc finger |
| IPR007087 | 274 | 297 | PD000003 | Zinc finger | |
| IPR007087 | 302 | 325 | PD000003 | Zinc finger | |
| IPR007087 | 330 | 353 | PD000003 | Zinc finger | |
| IPR007087 | 358 | 381 | PD000003 | Zinc finger | |
| IPR007087 | 386 | 409 | PD000003 | Zinc finger | |
| IPR007087 | 414 | 437 | PD000003 | Zinc finger | |
| IPR007087 | 442 | 465 | PD000003 | Zinc finger | |
| IPR007087 | 470 | 492 | PD000003 | Zinc finger | |
| IPR007087 | 498 | 521 | PD000003 | Zinc finger | |
| IPR007087 | 526 | 549 | PD000003 | Zinc finger | |
| IPR007087 | 554 | 577 | PD000003 | Zinc finger | |
| IPR007087 | 583 | 605 | PD000003 | Zinc finger | |
| IPR007087 | 610 | 633 | PD000003 | Zinc finger | |
| IPR007087 | 638 | 661 | PD000003 | Zinc finger | |
| IPR007087 | 666 | 689 | PD000003 | Zinc finger | |
| HMMPfam | IPR007087 | 190 | 212 | PF00096 | Zinc finger |
| IPR007087 | 246 | 268 | PF00096 | Zinc finger | |
| IPR007087 | 274 | 296 | PF00096 | Zinc finger | |
| IPR007087 | 302 | 324 | PF00096 | Zinc finger | |
| IPR007087 | 330 | 352 | PF00096 | Zinc finger | |
| IPR007087 | 358 | 380 | PF00096 | Zinc finger | |
| IPR007087 | 386 | 408 | PF00096 | Zinc finger | |
| IPR007087 | 414 | 436 | PF00096 | Zinc finger | |
| IPR007087 | 442 | 464 | PF00096 | Zinc finger | |
| IPR007087 | 470 | 492 | PF00096 | Zinc finger | |
| IPR007087 | 498 | 520 | PF00096 | Zinc finger | |
| IPR007087 | 526 | 548 | PF00096 | Zinc finger | |
| IPR007087 | 554 | 576 | PF00096 | Zinc finger | |
| IPR007087 | 610 | 632 | PF00096 | Zinc finger | |
| IPR007087 | 638 | 660 | PF00096 | Zinc finger | |
| IPR007087 | 666 | 688 | PF00096 | Zinc finger | |
| HMMSmart | IPR015880 | 190 | 212 | SM00355 | Zinc finger |
| IPR015880 | 246 | 268 | SM00355 | Zinc finger | |
| IPR015880 | 274 | 296 | SM00355 | Zinc finger | |
| IPR015880 | 302 | 324 | SM00355 | Zinc finger | |
| IPR015880 | 330 | 352 | SM00355 | Zinc finger | |
| IPR015880 | 358 | 380 | SM00355 | Zinc finger | |
| IPR015880 | 386 | 408 | SM00355 | Zinc finger | |
| IPR015880 | 414 | 436 | SM00355 | Zinc finger | |
| IPR015880 | 442 | 464 | SM00355 | Zinc finger | |
| IPR015880 | 470 | 492 | SM00355 | Zinc finger | |
| IPR015880 | 498 | 520 | SM00355 | Zinc finger | |
| IPR015880 | 526 | 548 | SM00355 | Zinc finger | |
| IPR015880 | 554 | 576 | SM00355 | Zinc finger | |
| IPR015880 | 582 | 604 | SM00355 | Zinc finger | |
| IPR015880 | 610 | 632 | SM00355 | Zinc finger | |
| IPR015880 | 638 | 660 | SM00355 | Zinc finger | |
| IPR015880 | 666 | 688 | SM00355 | Zinc finger | |
| ProfileScan | IPR007087 | 190 | 217 | PS50157 | Zinc finger |
| IPR007087 | 218 | 245 | PS50157 | Zinc finger | |
| IPR007087 | 246 | 273 | PS50157 | Zinc finger | |
| IPR007087 | 274 | 301 | PS50157 | Zinc finger | |
| IPR007087 | 302 | 329 | PS50157 | Zinc finger | |
| IPR007087 | 330 | 357 | PS50157 | Zinc finger | |
| IPR007087 | 358 | 385 | PS50157 | Zinc finger | |
| IPR007087 | 386 | 413 | PS50157 | Zinc finger | |
| IPR007087 | 414 | 441 | PS50157 | Zinc finger | |
| IPR007087 | 442 | 469 | PS50157 | Zinc finger | |
| IPR007087 | 470 | 497 | PS50157 | Zinc finger | |
| IPR007087 | 498 | 525 | PS50157 | Zinc finger | |
| IPR007087 | 526 | 553 | PS50157 | Zinc finger | |
| IPR007087 | 554 | 581 | PS50157 | Zinc finger | |
| IPR007087 | 582 | 609 | PS50157 | Zinc finger | |
| IPR007087 | 610 | 637 | PS50157 | Zinc finger | |
| IPR007087 | 638 | 665 | PS50157 | Zinc finger | |
| IPR007087 | 666 | 693 | PS50157 | Zinc finger | |
| ScanRegExp | IPR007087 | 192 | 212 | PS00028 | Zinc finger |
| IPR007087 | 248 | 268 | PS00028 | Zinc finger | |
| IPR007087 | 276 | 296 | PS00028 | Zinc finger | |
| IPR007087 | 304 | 324 | PS00028 | Zinc finger | |
| IPR007087 | 332 | 352 | PS00028 | Zinc finger | |
| IPR007087 | 360 | 380 | PS00028 | Zinc finger | |
| IPR007087 | 388 | 408 | PS00028 | Zinc finger | |
| IPR007087 | 416 | 436 | PS00028 | Zinc finger | |
| IPR007087 | 444 | 464 | PS00028 | Zinc finger | |
| IPR007087 | 472 | 492 | PS00028 | Zinc finger | |
| IPR007087 | 500 | 520 | PS00028 | Zinc finger | |
| IPR007087 | 528 | 548 | PS00028 | Zinc finger | |
| IPR007087 | 556 | 576 | PS00028 | Zinc finger | |
| IPR007087 | 612 | 632 | PS00028 | Zinc finger | |
| IPR007087 | 640 | 660 | PS00028 | Zinc finger | |
| IPR007087 | 668 | 688 | PS00028 | Zinc finger |
Prediction of transmembrane (TM) segments| Method | No. | N terminal | transmembrane region | C terminal | type | length | SOSUI2 | 1 | 2 | LLIVLCVVFISFIFFLGEAIGKM | 24 | PRIMARY | 23 |
|---|
