ORK07596

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK07596

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Accession No	AK226066
Product ID	ORK07596
Clone name	fj10535
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	LAMP2
cDNA sequence	DNA sequence (4108 bp) Predicted protein sequence (458 aa)
HaloTag ORF Clone	FHC07596
Flexi ORF Clone	FXC07596
Description	Homo sapiens mRNA for lysosomal-associated membrane protein 2 precursor variant, clone: fj10535.

Features of the cloned cDNA sequence

Description

Length: 4108 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Features of the protein sequence

Description

Length: 458 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
AAS67876	4.9e-171	100.0	lysosomal-assoc...	Homo sapiens
AAB35426	1.1e-162	95.1	lysosome-associ...	Homo sapiens
P13473	1.5e-161	94.3	Lysosome-associ...	Homo sapiens
CAH92900	1.1e-159	92.9	hypothetical pr...	Pongo abelii
AAB41647	7e-159	93.1	lysosomal membr...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR002000	268	292	PR00336	Lysosome-associated membrane glycoprotein (Lamp)/CD68
	IPR002000	370	384	PR00336	Lysosome-associated membrane glycoprotein (Lamp)/CD68
	IPR002000	407	419	PR00336	Lysosome-associated membrane glycoprotein (Lamp)/CD68
	IPR002000	422	444	PR00336	Lysosome-associated membrane glycoprotein (Lamp)/CD68
HMMPfam	IPR002000	91	458	PF01299	Lysosome-associated membrane glycoprotein (Lamp)/CD68
ScanRegExp	IPR002000	87	101	PS00310	Lysosome-associated membrane glycoprotein (Lamp)/CD68

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	46	GVMVCFRLFPVPGSGLVLVCLVL	68	PRIMARY	23
SOSUI2	2	422	NFLIPVAVGVALGFLIIVVFISY	444	PRIMARY	23